CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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Zfp647
(
Mus musculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMUSG00000054967
T101305_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including genitourinary system; gut; limb; nervous system; and retina. Orthologous to human ZNF250 (zinc finger protein 250). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.816
0.980
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.816
0.980
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.816
0.980
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.816
0.980
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.816
0.973
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000041575
C2H2 ZF
174
196
YICIECGKCFGRSSHLLQHQRIH
ENSMUSP00000041575
C2H2 ZF
202
224
YVCHVCGKAFSQSSVLSKHRRIH
ENSMUSP00000041575
C2H2 ZF
230
252
YECNECGKAFRVSSDLAQHHKIH
ENSMUSP00000041575
C2H2 ZF
258
280
HECLECGKAFTQLSHLIQHQRIH
ENSMUSP00000041575
C2H2 ZF
286
308
YVCPLCGKAFNHSTVLRSHQRVH
ENSMUSP00000041575
C2H2 ZF
316
336
CSECGKTFSVKRTLLQHQRVH
ENSMUSP00000041575
C2H2 ZF
342
364
YTCSECGKAFSDRSVLIQHHNVH
ENSMUSP00000041575
C2H2 ZF
370
392
YECSECGKTFSHRSTLMNHERIH
ENSMUSP00000041575
C2H2 ZF
398
420
YACYECGKAFVQHSHLIQHQRVH
ENSMUSP00000041575
C2H2 ZF
426
448
YVCGECGHAFSARRSLIQHERIH
ENSMUSP00000041575
C2H2 ZF
454
476
FQCTECGKAFSLKATLIVHLRTH
ENSMUSP00000041575
C2H2 ZF
482
504
YECNSCGKAFSQYSVLIQHQRIH
ENSMUSP00000041575
C2H2 ZF
510
532
YECGECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Mus musculus
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy