Zic2 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000061524 T101372_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zic2
M00150_2.00
Mus musculus
NCMYVYNRNN

NNYNRBRKGN
PBM
Badis et al.(2009)
Zic2_2895
(Direct) (Direct)
Zic2
M09011_2.00
Mus musculus
NRMYHCCTGCTGDGH

DCHCAGCAGGDRKYN
Misc
Kulakovskiy et al.(2013)
ZIC2_MOUSE.H11MO.0.C
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZIC2
M08233_2.00
Homo sapiens
BBCCTGCWGNB

VNCWGCAGGVV
ChIP-seq
Najafabadi et al.(2015b)
ZIC2
0.827 1.000
ZIC2
M10107_2.00
Homo sapiens
VACCMCCCH

DGGGKGGTB
Transfac
Matys et al.(2006)
V$ZIC2_01
0.827 1.000
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK

MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.804 0.973
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG

CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.804 0.973
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH

DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.804 0.973
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH

DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.804 0.973
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.804 0.973
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.804 0.973
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV

BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.804 0.973
ZIC1
M10227_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.804 0.973
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM

KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.804 0.973
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH

DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.804 0.973
Zic3
M00151_2.00
Mus musculus
NCMYVBNRNB

VNYNVBRKGN
PBM
Badis et al.(2009)
Zic3_3119
0.795 0.911
ZIC3
M02894_2.00
Homo sapiens
BACCCCCYGCKGYGH

DCRCMGCRGGGGGTV
SELEX
Jolma et al.(2013)
ZIC3_1
0.795 0.911
Zic3
M02936_2.00
Mus musculus
KRCCCCCYGCTGYGH

DCRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
Zic3_1
0.795 0.911
ZIC3
M04491_2.00
Homo sapiens
VGACCCCCYGCTGTGM

KCACAGCRGGGGGTCB
SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX
0.795 0.911
ZIC3
M04493_2.00
Homo sapiens
BACCCCCYGCTGYGH

DCRCAGCRGGGGGTV
SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX
0.795 0.911
ZIC3
M08902_2.00
Homo sapiens
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B
0.795 0.911
Zic3
M09013_2.00
Mus musculus
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A
0.795 0.911
ZIC3
M10229_2.00
Homo sapiens
VRBCMCCCN

NGGGKGVYB
Transfac
Matys et al.(2006)
V$ZIC3_01
0.795 0.911
Zic3
M10359_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC3_07
0.795 0.911
ZIC3
M04492_2.00
Homo sapiens
NKACCCCCTGCTGTGM

KCACAGCAGGGGGTMN
SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX
0.795 0.911
ZIC3
M04494_2.00
Homo sapiens
BRCCCCCTGCTGTGM

KCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX
0.795 0.911
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH

DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.788 0.902
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH

DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.788 0.902
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH

DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.788 0.902
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00150_2.00 C2H2 ZF 21 41
M00150_2.00 C2H2 ZF 50 77
M00150_2.00 C2H2 ZF 83 107
M00150_2.00 C2H2 ZF 113 137
M00150_2.00 C2H2 ZF 143 165

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000075283 C2H2 ZF 270 290
ENSMUSP00000075283 C2H2 ZF 299 326
ENSMUSP00000075283 C2H2 ZF 332 356
ENSMUSP00000075283 C2H2 ZF 362 386
ENSMUSP00000075283 C2H2 ZF 392 414

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

Invalid Input OrderBy

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action