PRDM1 (Ornithorhynchus anatinus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOANG00000004176 T102294_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY

RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.825 0.982
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN

NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.823 0.965
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT

AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.823 0.965
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN

NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.823 0.965
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY

RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.823 0.965
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN

NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.823 0.965
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC

GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.823 0.965
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT

AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.823 0.965
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY

RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.823 0.965
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY

RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.823 0.965
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN

NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.823 0.965
PRDM1
M10108_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.823 0.965
PRDM1
M10109_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.823 0.965
PRDM1
M10110_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.823 0.965
PRDM1
M10111_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.823 0.965
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN

NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.823 0.965
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000006627 C2H2 ZF 608 630
ENSOANP00000006627 C2H2 ZF 636 658
ENSOANP00000006627 C2H2 ZF 664 686
ENSOANP00000006627 C2H2 ZF 692 714
ENSOANP00000006627 C2H2 ZF 720 741

Links

Other C2H2 ZF family TFs
Other Ornithorhynchus anatinus TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Prdm1 Rattus norvegicus ENSRNOG00000000323 I 0.825
Prdm1 Mus musculus ENSMUSG00000038151 D 0.825
PRDM1 Loxodonta africana ENSLAFG00000013436 I 0.825
PRDM1 Ochotona princeps ENSOPRG00000006055 I 0.825
PRDM1 Otolemur garnettii ENSOGAG00000014036 I 0.825
PRDM1 Tupaia belangeri ENSTBEG00000004089 I 0.825
ENSSTOG00000016505 Ictidomys tridecemlineatus ENSSTOG00000016505 I 0.825
PRDM1 Callithrix jacchus ENSCJAG00000006332 I 0.825
ENSTSYG00000011666 Tarsius syrichta ENSTSYG00000011666 I 0.825
ENSPANG00000016727 Papio anubis ENSPANG00000016727 I 0.823
Cmyd_10006231 Chelonia mydas Cmyd_10006231 I 0.823
ENSP00000358092 Macaca fascicularis ENSP00000358092 I 0.823
ENSPPYG00000016879 Pongo abelii ENSPPYG00000016879 I 0.823
Alligator_sinensis_CCG010485.1 Alligator sinensis Alligator_sinensis_CCG010485.1 I 0.823
PRDM1 Pan troglodytes ENSPTRG00000018457 I 0.823
ENSPSIG00000002661 Pelodiscus sinensis ENSPSIG00000002661 I 0.823
ENSNLEG00000013211 Nomascus leucogenys ENSNLEG00000013211 I 0.823
PRDM1 Gorilla gorilla ENSGGOG00000001929 I 0.823
ENSCSAG00000014744 Chlorocebus sabaeus ENSCSAG00000014744 I 0.823
PRDM1 Microcebus murinus ENSMICG00000010329 I 0.823
PRDM1 Homo sapiens ENSG00000057657 D 0.823
PRDM1 Macaca mulatta ENSMMUG00000021401 I 0.823
PRDM1 Canis familiaris ENSCAFG00000003694 I 0.822
PRDM1 Sus scrofa ENSSSCG00000004369 I 0.822
PRDM1 Equus caballus ENSECAG00000009044 I 0.822
ENSMPUG00000009522 Mustela putorius furo ENSMPUG00000009522 I 0.822
Myotis_brandtii_PRDM1_10034696 Myotis brandtii Myotis_brandtii_PRDM1_10034696 I 0.822
PRDM1 Pteropus vampyrus ENSPVAG00000011732 I 0.822
ENSAMEG00000001482 Ailuropoda melanoleuca ENSAMEG00000001482 I 0.822
PRDM1 Myotis lucifugus ENSMLUG00000014085 I 0.822
PRDM1 Tursiops truncatus ENSTTRG00000012894 I 0.822
PRDM1 Felis catus ENSFCAG00000010755 I 0.822
ENSMEUG00000000043 Macropus eugenii ENSMEUG00000000043 I 0.821
ENSSHAG00000010080 Sarcophilus harrisii ENSSHAG00000010080 I 0.821
PRDM1 Erinaceus europaeus ENSEEUG00000013222 I 0.820
PRDM1 Sorex araneus ENSSARG00000004079 I 0.820
PRDM1 Cavia porcellus ENSCPOG00000014064 I 0.817
PRDM1 Echinops telfairi ENSETEG00000019669 I 0.817
PRDM1 Oryctolagus cuniculus ENSOCUG00000015495 I 0.817
PRDM1 Monodelphis domestica ENSMODG00000018029 I 0.813
ENSAMXG00000004952 Astyanax mexicanus ENSAMXG00000004952 I 0.787
ENSTNIG00000012300 Tetraodon nigroviridis ENSTNIG00000012300 I 0.768