CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM4
(
Ornithorhynchus anatinus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOANG00000005526
T102317_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.819
0.964
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.819
0.964
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.819
0.964
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.819
0.964
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000008775
C2H2 ZF
590
612
WKCSMCPQAFISPSKLHVHFMGH
ENSOANP00000008775
C2H2 ZF
618
640
HKCDFCSKAFSDPSNLRTHLKIH
ENSOANP00000008775
C2H2 ZF
646
668
YRCALCDKSFTQKAHLESHMVIH
ENSOANP00000008775
C2H2 ZF
674
696
LKCDYCDKLFMRRQDLKQHVLTH
ENSOANP00000008775
C2H2 ZF
702
724
IKCPKCEKLFLRTNHLKKHLNSH
ENSOANP00000008775
C2H2 ZF
730
751
YVCEKCSKAYLTKYHLTRHLKI
ENSOANP00000008777
C2H2 ZF
590
612
WKCSMCPQAFISPSKLHVHFMGH
ENSOANP00000008777
C2H2 ZF
618
640
HKCDFCSKAFSDPSNLRTHLKIH
ENSOANP00000008777
C2H2 ZF
646
668
YRCALCDKSFTQKAHLESHMVIH
ENSOANP00000008777
C2H2 ZF
674
696
LKCDYCDKLFMRRQDLKQHVLTH
ENSOANP00000008777
C2H2 ZF
702
724
IKCPKCEKLFLRTNHLKKHLNSH
ENSOANP00000008777
C2H2 ZF
730
751
YVCEKCSKAYLTKYHLTRHLKI
Links
Other
C2H2 ZF
family TFs
Other
Ornithorhynchus anatinus
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy