CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF454
(
Oryctolagus cuniculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOCUG00000029119
T103232_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF454
M08256_2.00
Homo sapiens
GWGCYTT
AARGCWC
ChIP-seq
Najafabadi et al.(2015b)
ZNF454
0.794
0.949
ZNF454
M04571_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_1
0.794
0.949
ZNF454
M04572_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_2
0.794
0.949
ZNF454
M08346_2.00
Homo sapiens
KVVRNCHNYMRGGGCCNDGDGCCWTTB
VAAWGGCHCHNGGCCCYKRNDGNYBBM
ChIP-seq
Schmitges et al.(2016)
Q8N9F8_4-12.RCADE
0.794
0.949
ZNF454
M07651_2.00
Homo sapiens
CRKVVRHCCVYCRGGVCCBVGAGCCNKYB
VRMNGGCTCBVGGBCCYGRBRGDYBBMYG
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF454.MEME.OriginalMapping
0.794
0.949
ZNF454
M04573_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_1
0.794
0.949
ZNF454
M04574_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_2
0.794
0.949
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000027004
C2H2 ZF
89
111
FECSECGKGFSRSSALNKHQKTH
ENSOCUP00000027004
C2H2 ZF
128
150
YECRECGKAFHQSTHLIHHQRIH
ENSOCUP00000027004
C2H2 ZF
156
178
YECKECGKAFSVSSSLTYHQKIH
ENSOCUP00000027004
C2H2 ZF
184
206
FECNLCGKAFIRNIHLSHHHRIH
ENSOCUP00000027004
C2H2 ZF
212
234
FKCNVCEKAFVCRAHLTKHQNIH
ENSOCUP00000027004
C2H2 ZF
240
262
YKCNECGKAFNQSTSFLQHQRIH
ENSOCUP00000027004
C2H2 ZF
268
290
FECNACGKAFRVNSSLTEHQRIH
ENSOCUP00000027004
C2H2 ZF
296
318
YKCSECGKAFRDNSSFARHRKIH
ENSOCUP00000027004
C2H2 ZF
324
346
YRCGLCEKAFRDQSALAQHQRIH
ENSOCUP00000027004
C2H2 ZF
352
374
YACNVCGKAFSDHSALTQHKRIH
ENSOCUP00000027004
C2H2 ZF
380
402
YKCKTCGKAFIRSTHLTQHQRIH
ENSOCUP00000027004
C2H2 ZF
408
430
YKCSKCGKAFNQTANLIQHQRHH
Links
Other
C2H2 ZF
family TFs
Other
Oryctolagus cuniculus
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy