CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF449
(
Otolemur garnettii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOGAG00000003684
T103383_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF449
M04560_2.00
Homo sapiens
NTGYTKGCWCGCGAB
VTCGCGWGCMARCAN
SELEX
Yin et al.(2017)
ZNF449_eDBD_HT-SELEX_1
0.822
0.988
ZNF449
M04561_2.00
Homo sapiens
RCGCCCAACC
GGTTGGGCGY
SELEX
Yin et al.(2017)
ZNF449_eDBD_HT-SELEX_2
0.822
0.988
ZNF449
M08344_2.00
Homo sapiens
NNVAGCCCARCCHNNNNNNNN
NNNNNNNNDGGYTGGGCTBNN
ChIP-seq
Schmitges et al.(2016)
Q6P9G9_1-7.RCADE
0.822
0.988
ZNF449
M08922_2.00
Homo sapiens
VAGCCCARCCN
NGGYTGGGCTB
Misc
Kulakovskiy et al.(2013)
ZN449_HUMAN.H11MO.0.C
0.822
0.988
ZNF449
M04562_2.00
Homo sapiens
MMGCCCMACC
GGTKGGGCKK
SELEX
Yin et al.(2017)
ZNF449_eDBD_Methyl-HT-SELEX_1
0.822
0.988
ZNF449
M04563_2.00
Homo sapiens
NTGYTKGCDCGCGWB
VWCGCGHGCMARCAN
SELEX
Yin et al.(2017)
ZNF449_eDBD_Methyl-HT-SELEX_2
0.822
0.988
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000003270
C2H2 ZF
322
344
HRCPQCGKCFARKSQLTGHQRIH
ENSOGAP00000003270
C2H2 ZF
350
372
HKCPECGKRFLRSSDLYRHQRLH
ENSOGAP00000003270
C2H2 ZF
378
400
YECTVCKKRFTRRSHLMGHQRTH
ENSOGAP00000003270
C2H2 ZF
406
428
YKCLECGKTFCHGSSLKRHLKTH
ENSOGAP00000003270
C2H2 ZF
434
456
HRCHNCGKSFSRLTALTLHQRTH
ENSOGAP00000003270
C2H2 ZF
462
484
FKCNYCGKSFRQRPSLVIHLRIH
ENSOGAP00000003270
C2H2 ZF
490
512
YKCTHCSKSFRQRAGLIMHQVTH
Links
Other
C2H2 ZF
family TFs
Other
Otolemur garnettii
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy