CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ZKSCAN3
(
Otolemur garnettii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOGAG00000006596
T103434_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN3
M02923_2.00
Homo sapiens
TCGAGGYTAGMCCA
TGGKCTARCCTCGA
SELEX
Jolma et al.(2013)
ZNF306_1
0.788
0.913
ZKSCAN3
M07696_2.00
Homo sapiens
GGCTAGMCC
GGKCTAGCC
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN3.RCADE.OriginalMapping
0.788
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000005898
C2H2 ZF
310
332
HVCHECGKSFAQSSGLSKHRRIH
ENSOGAP00000005898
C2H2 ZF
338
360
YECEECGKAFIGSSALIIHQRVH
ENSOGAP00000005898
C2H2 ZF
366
388
YECEECGKAFSHSSDLIKHQRTH
ENSOGAP00000005898
C2H2 ZF
394
416
YECDNCGKTFSQSCSLLEHHRIH
ENSOGAP00000005898
C2H2 ZF
422
444
YQCNMCGKSFRRNSHLLRHQRIH
ENSOGAP00000005898
C2H2 ZF
477
499
YKCSKHGRSFTQNTGLTEHQKIH
ENSOGAP00000005898
C2H2 ZF
505
527
YQCDTCGKGFTRISYLVQHQKSH
Links
Other
C2H2 ZF
family TFs
Other
Otolemur garnettii
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy