CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BCL6B
(
Otolemur garnettii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOGAG00000027908
T103708_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL6B
M02896_2.00
Homo sapiens
TGCTTTCTAGGAATTMM
KKAATTCCTAGAAAGCA
SELEX
Jolma et al.(2013)
BCL6B_1
0.825
0.974
BCL6B
M04499_2.00
Homo sapiens
NNGCTTTCKAGGAAHN
NDTTCCTMGAAAGCNN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_1
0.825
0.974
BCL6B
M04500_2.00
Homo sapiens
NDTTCCTCGATTRCVN
NBGYAATCGAGGAAHN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_2
0.825
0.974
BCL6B
M04501_2.00
Homo sapiens
NHGCTTTCTAGGAAHN
NDTTCCTAGAAAGCDN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_1
0.825
0.974
BCL6B
M04502_2.00
Homo sapiens
NWTTCCTAGATTACRN
NYGTAATCTAGGAAWN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_2
0.825
0.974
Bcl6b
M00128_2.00
Mus musculus
NYYYTYCYWNNN
NNNWRGRARRRN
PBM
Badis et al.(2009)
Bcl6b_0961
0.815
0.974
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000015874
C2H2 ZF
478
500
YKCQLCQSAFRYKGNLASHRTVH
ENSOGAP00000015874
C2H2 ZF
506
528
YHCSVCGARFNRPANLKTHSRIH
ENSOGAP00000015874
C2H2 ZF
534
556
YKCETCGSRFVQVAHLRAHVLIH
ENSOGAP00000015874
C2H2 ZF
562
584
YPCPTCGTRFRHLQTLKSHVRIH
ENSOGAP00000015874
C2H2 ZF
590
613
YHCDPCGLHFRHKSQLRLHLRQKH
ENSOGAP00000020968
C2H2 ZF
320
342
YKCQLCQSAFRYKGNLASHRTVH
ENSOGAP00000020968
C2H2 ZF
348
370
YHCSVCGARFNRPANLKTHSRIH
ENSOGAP00000020968
C2H2 ZF
376
398
YKCETCGSRFVQVAHLRAHVLIH
ENSOGAP00000020968
C2H2 ZF
404
426
YPCPTCGTRFRHLQTLKSHVRIH
ENSOGAP00000020968
C2H2 ZF
432
455
YHCDPCGLHFRHKSQLRLHLRQKH
Links
Other
C2H2 ZF
family TFs
Other
Otolemur garnettii
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy