SNAI1 (Otolemur garnettii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOGAG00000030111 T103778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN

NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.825 0.989
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN

NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.825 0.989
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB

VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.825 0.989
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.825 0.989
SNAI1
M10201_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.825 0.989
SNAI1
M10202_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.825 0.989
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN

NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.825 0.989
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN

NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.825 0.989
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN

NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.822 0.967
Snai1
M09002_2.00
Mus musculus
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.822 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000018138 C2H2 ZF 154 176
ENSOGAP00000018138 C2H2 ZF 180 202
ENSOGAP00000018138 C2H2 ZF 208 230
ENSOGAP00000018138 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Otolemur garnettii TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Snai1 Mus musculus ENSMUSG00000042821 D 0.822
SNAI1 Homo sapiens ENSG00000124216 D 0.825
snai3 Xenopus tropicalis XB-GENE-488030 I 0.775
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.822
Snai1 Rattus norvegicus ENSRNOG00000009594 I 0.822
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.819
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.825
ENSPFOG00000015709 Poecilia formosa ENSPFOG00000015709 I 0.779
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.816
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.825
ENSONIG00000020305 Oreochromis niloticus ENSONIG00000020305 I 0.779
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.816
ENSTNIG00000004434 Tetraodon nigroviridis ENSTNIG00000004434 I 0.767
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.816
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I 0.814
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.819
GB53867 Apis mellifera GB53867 I 0.758
GM16048 Drosophila sechellia FBgn0170964 I 0.759
ENSXMAG00000009637 Xiphophorus maculatus ENSXMAG00000009637 I 0.779
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.819
snai1a Takifugu rubripes ENSTRUG00000012293 I 0.779
snai3 Takifugu rubripes ENSTRUG00000002385 I 0.779
snai1a Tetraodon nigroviridis ENSTNIG00000007311 I 0.779
SNAI1 Oryctolagus cuniculus ENSOCUG00000005422 I 0.790
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.819
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.825
ENSDNOG00000024891 Dasypus novemcinctus ENSDNOG00000024891 I 0.772
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.816
snai1a Danio rerio ENSDARG00000056995 I 0.775
snai3 Danio rerio ENSDARG00000031243 I 0.757
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.825
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.819
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.825
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.816
SNAI1 Bos taurus ENSBTAG00000014554 I 0.819
SNAI1 Equus caballus ENSECAG00000009787 I 0.803
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.816
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.816
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.825
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.816
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.825
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.805
ENSGMOG00000017815 Gadus morhua ENSGMOG00000017815 I 0.779
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.825
snai1a Gasterosteus aculeatus ENSGACG00000010147 I 0.779
SNAI1 Felis catus ENSFCAG00000010558 I 0.805
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.816