SNAI1 (Otolemur garnettii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOGAG00000030111 T103778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN

NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.825 0.989
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN

NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.825 0.989
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB

VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.825 0.989
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.825 0.989
SNAI1
M10201_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.825 0.989
SNAI1
M10202_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.825 0.989
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN

NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.825 0.989
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN

NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.825 0.989
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN

NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.822 0.967
Snai1
M09002_2.00
Mus musculus
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.822 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000018138 C2H2 ZF 154 176
ENSOGAP00000018138 C2H2 ZF 180 202
ENSOGAP00000018138 C2H2 ZF 208 230
ENSOGAP00000018138 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Otolemur garnettii TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
COCC4DRAFT_163610 Bipolaris maydis COCC4DRAFT_163610 N 0.000
COCMIDRAFT_6357 Bipolaris oryzae COCMIDRAFT_6357 N 0.000
COCSADRAFT_172560 Bipolaris sorokiniana COCSADRAFT_172560 N 0.000
COCVIDRAFT_38627 Bipolaris victoriae COCVIDRAFT_38627 N 0.000
estExt_Genewise1.C_30463 Cochliobolus heterostrophus C5 estExt_Genewise1.C_30463 N 0.000
SETTUDRAFT_21334 Setosphaeria turcica SETTUDRAFT_21334 N 0.000