CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF140
(
Otolemur garnettii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOGAG00000030665
T103798_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF140
M04621_2.00
Homo sapiens
DRCAATTCCGCTCN
NGAGCGGAATTGYH
SELEX
Yin et al.(2017)
ZNF140_eDBD_HT-SELEX
0.810
0.965
ZNF140
M08372_2.00
Homo sapiens
CAATTCYGCYCHNNNNNNNNNNNB
VNNNNNNNNNNNDGRGCRGAATTG
ChIP-seq
Schmitges et al.(2016)
P52738_3-10.RCADE
0.810
0.965
ZNF140
M08945_2.00
Homo sapiens
NNNDNYBYWGCAATTCYRCTCCHN
NDGGAGYRGAATTGCWRVRNHNNN
Misc
Kulakovskiy et al.(2013)
ZN140_HUMAN.H11MO.0.C
0.810
0.965
ZNF140
M04622_2.00
Homo sapiens
NRCAATTCCGCTCV
BGAGCGGAATTGYN
SELEX
Yin et al.(2017)
ZNF140_eDBD_Methyl-HT-SELEX
0.810
0.965
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000017259
C2H2 ZF
158
180
YGCHECGKTFSRRFSLVLHQRTH
ENSOGAP00000017259
C2H2 ZF
186
208
YVCKECGKTFSQISNLVKHQMIH
ENSOGAP00000017259
C2H2 ZF
214
236
HECKDCNKTFSYLSFLIEHQRTH
ENSOGAP00000017259
C2H2 ZF
242
264
YECTECGKAFSRASNLTRHQRIH
ENSOGAP00000017259
C2H2 ZF
270
292
YVCRKCGKAFSSGSELIRHQITH
ENSOGAP00000017259
C2H2 ZF
298
320
YECIECGKAFRRFSHLTRHQSIH
ENSOGAP00000017259
C2H2 ZF
326
348
YECSECRKAFRCHSFLTKHQRIH
ENSOGAP00000017259
C2H2 ZF
354
376
YECEECGKVFTWHASLIQHMKIH
ENSOGAP00000017259
C2H2 ZF
382
404
YACAECDKAFSRSFSLILHQRTH
ENSOGAP00000017259
C2H2 ZF
410
432
YVCKVCNKSFSWSSNLAKHQRTH
Links
Other
C2H2 ZF
family TFs
Other
Otolemur garnettii
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy