CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSONIG00000003608
(
Oreochromis niloticus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSONIG00000003608
T103980_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN
NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.821
0.974
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS
STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.821
0.974
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR
YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.821
0.974
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.775
0.957
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK
MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.775
0.957
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV
BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.775
0.957
GLI3
M10167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.775
0.957
GLI3
M10168_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.775
0.957
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.775
0.957
Gli2
M01024_2.00
Mus musculus
NGACCACCYN
NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.767
0.957
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.767
0.957
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.767
0.957
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN
NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.767
0.957
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.767
0.957
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG
CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.767
0.957
GLI2
M10114_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.767
0.957
GLI2
M10115_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.767
0.957
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.767
0.957
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSONIP00000004536
C2H2 ZF
394
419
TNCHWEGCTKEYDTQDQLVHHINNDH
ENSONIP00000004536
C2H2 ZF
427
454
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSONIP00000004536
C2H2 ZF
460
484
HKCTFEGCSKAYSRLENLKTHLRSH
ENSONIP00000004536
C2H2 ZF
490
515
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSONIP00000004536
C2H2 ZF
521
546
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSONIP00000004537
C2H2 ZF
370
395
TNCHWEGCTKEYDTQDQLVHHINNDH
ENSONIP00000004537
C2H2 ZF
403
430
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSONIP00000004537
C2H2 ZF
436
460
HKCTFEGCSKAYSRLENLKTHLRSH
ENSONIP00000004537
C2H2 ZF
466
491
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSONIP00000004537
C2H2 ZF
497
522
YVCKIPGCTKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Oreochromis niloticus
TFs
142 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPFOG00000014778
Poecilia formosa
ENSPFOG00000014778
I
0.827
ENSLOCG00000002028
Lepisosteus oculatus
ENSLOCG00000002028
I
0.825
ENSONIG00000004472
Oreochromis niloticus
ENSONIG00000004472
I
0.825
ENSGMOG00000010335
Gadus morhua
ENSGMOG00000010335
I
0.822
gli2a
Danio rerio
ENSDARG00000025641
I
0.821
Gli3
Mus musculus
ENSMUSG00000021318
D
0.821
ENSSTOG00000020844
Ictidomys tridecemlineatus
ENSSTOG00000020844
I
0.821
Gli3
Rattus norvegicus
ENSRNOG00000014395
I
0.821
GLI3
Cavia porcellus
ENSCPOG00000013233
I
0.821
gli1
Tetraodon nigroviridis
ENSTNIG00000007058
I
0.817
gli2b
Takifugu rubripes
ENSTRUG00000001954
I
0.815
gli2b
Gasterosteus aculeatus
ENSGACG00000001547
I
0.815
gli1
Gasterosteus aculeatus
ENSGACG00000006458
I
0.815
ENSGMOG00000007975
Gadus morhua
ENSGMOG00000007975
I
0.815
gli1
Takifugu rubripes
ENSTRUG00000014998
I
0.815
ENSXMAG00000017965
Xiphophorus maculatus
ENSXMAG00000017965
I
0.813
gli1
Oryzias latipes
ENSORLG00000005455
I
0.813
ENSPFOG00000006269
Poecilia formosa
ENSPFOG00000006269
I
0.813
ENSONIG00000005084
Oreochromis niloticus
ENSONIG00000005084
I
0.813
gli2.S
Xenopus laevis
XB-GENE-6251939
I
0.810
gli2.L
Xenopus laevis
XB-GENE-17342592
I
0.810
fgenesh2_pg.scaffold_137000068
Branchiostoma floridae
fgenesh2_pg.scaffold_137000068
I
0.806
fgenesh2_pg.scaffold_169000072
Branchiostoma floridae
fgenesh2_pg.scaffold_169000072
I
0.806
Tal_R006208
Tyto alba
Tal_R006208
I
0.781
ENSFALG00000013217
Ficedula albicollis
ENSFALG00000013217
I
0.781
Gfo_R001212
Geospiza fortis
Gfo_R001212
I
0.781
GLI2
Taeniopygia guttata
ENSTGUG00000004599
I
0.781
GLI2
Meleagris gallopavo
ENSMGAG00000011872
I
0.781
ENSAPLG00000015141
Anas platyrhynchos
ENSAPLG00000015141
I
0.781
Cmyd_10009086
Chelonia mydas
Cmyd_10009086
I
0.781
ENSPSIG00000008752
Pelodiscus sinensis
ENSPSIG00000008752
I
0.781
Brh_R010932
Buceros rhinoceros
Brh_R010932
I
0.781
ENSPFOG00000005116
Poecilia formosa
ENSPFOG00000005116
I
0.781
Afo_R006826
Aptenodytes forsteri
Afo_R006826
I
0.781
ENSXMAG00000006443
Xiphophorus maculatus
ENSXMAG00000006443
I
0.781
Aan_R003640
Calypte anna
Aan_R003640
I
0.781
GLI2
Gallus gallus
ENSGALG00000011630
I
0.781
ENSAMXG00000003125
Astyanax mexicanus
ENSAMXG00000003125
I
0.779
ENSAMXG00000006646
Astyanax mexicanus
ENSAMXG00000006646
I
0.779
gli2b
Takifugu rubripes
ENSTRUG00000010444
I
0.779
Ogr02489
Ophisaurus gracilis
Ogr02489
I
0.779
gli2b
Danio rerio
ENSDARG00000020884
I
0.779
Pvit_06470
Pogona vitticeps
Pvit_06470
I
0.779
GLI2
Anolis carolinensis
ENSACAG00000004133
I
0.779
ENSLACG00000017364
Latimeria chalumnae
ENSLACG00000017364
I
0.776
XP_002933450
Xenopus tropicalis
XP_002933450
I
0.775
GLI3
Otolemur garnettii
ENSOGAG00000012651
I
0.775
GLI3
Oryctolagus cuniculus
ENSOCUG00000006563
I
0.775
XP_002933449
Xenopus tropicalis
XP_002933449
I
0.775
ENSPPYG00000017613
Pongo abelii
ENSPPYG00000017613
I
0.775
ENSPANG00000014545
Papio anubis
ENSPANG00000014545
I
0.775
gli3.L
Xenopus laevis
XB-GENE-865509
I
0.775
GLI3
Procavia capensis
ENSPCAG00000015092
I
0.775
GLI3
Ochotona princeps
ENSOPRG00000011225
I
0.775
GLI3
Tupaia belangeri
ENSTBEG00000006673
I
0.775
Brh_R008256
Buceros rhinoceros
Brh_R008256
I
0.775
Afo_R007816
Aptenodytes forsteri
Afo_R007816
I
0.775
Cmyd_10007839
Chelonia mydas
Cmyd_10007839
I
0.775
Gfo_R007869
Geospiza fortis
Gfo_R007869
I
0.775
ENSP00000379258
Macaca fascicularis
ENSP00000379258
I
0.775
Aan_R014715
Calypte anna
Aan_R014715
I
0.775
GLI3
Tursiops truncatus
ENSTTRG00000003628
I
0.775
GLI3
Pteropus vampyrus
ENSPVAG00000015920
I
0.775
GLI3
Pan troglodytes
ENSPTRG00000019117
I
0.775
ENSSHAG00000009727
Sarcophilus harrisii
ENSSHAG00000009727
I
0.775
Pvit_19093
Pogona vitticeps
Pvit_19093
I
0.775
ENSTSYG00000009406
Tarsius syrichta
ENSTSYG00000009406
I
0.775
ENSPSIG00000017804
Pelodiscus sinensis
ENSPSIG00000017804
I
0.775
ENSOARG00000017420
Ovis aries
ENSOARG00000017420
I
0.775
GLI3
Bos taurus
ENSBTAG00000010671
I
0.775
GLI3
Felis catus
ENSFCAG00000011989
I
0.775
GLI3
Myotis lucifugus
ENSMLUG00000015711
I
0.775
GLI3
Dasypus novemcinctus
ENSDNOG00000049286
I
0.775
GLI3
Macaca mulatta
ENSMMUG00000013614
I
0.775
GLI3
Meleagris gallopavo
ENSMGAG00000012277
I
0.775
GLI3
Canis familiaris
ENSCAFG00000003535
I
0.775
GLI3
Callithrix jacchus
ENSCJAG00000007690
I
0.775
ENSCSAG00000015361
Chlorocebus sabaeus
ENSCSAG00000015361
I
0.775
GLI3
Choloepus hoffmanni
ENSCHOG00000003774
I
0.775
ENSMEUG00000013134
Macropus eugenii
ENSMEUG00000013134
I
0.775
GLI3
Loxodonta africana
ENSLAFG00000008944
I
0.775
GLI3
Gorilla gorilla
ENSGGOG00000002026
I
0.775
GLI3
Anolis carolinensis
ENSACAG00000017547
I
0.775
ENSNLEG00000003160
Nomascus leucogenys
ENSNLEG00000003160
I
0.775
GLI3
Ornithorhynchus anatinus
ENSOANG00000010699
I
0.775
ENSFALG00000005113
Ficedula albicollis
ENSFALG00000005113
I
0.775
ENSAMEG00000008405
Ailuropoda melanoleuca
ENSAMEG00000008405
I
0.775
GLI3
Homo sapiens
ENSG00000106571
D
0.775
GLI3
Monodelphis domestica
ENSMODG00000002714
I
0.775
ENSGALG00000012329
Gallus gallus
ENSGALG00000012329
I
0.775
ENSAPLG00000004361
Anas platyrhynchos
ENSAPLG00000004361
I
0.775
ENSMPUG00000018143
Mustela putorius furo
ENSMPUG00000018143
I
0.775
GLI3
Equus caballus
ENSECAG00000009281
I
0.775
gli3
Danio rerio
ENSDARG00000052131
I
0.773
Pvit_05813
Pogona vitticeps
Pvit_05813
I
0.773
GLI1
Anolis carolinensis
ENSACAG00000006541
I
0.773
ENSSHAG00000004233
Sarcophilus harrisii
ENSSHAG00000004233
I
0.771
ENSLOCG00000005938
Lepisosteus oculatus
ENSLOCG00000005938
I
0.771
ENSAMXG00000017236
Astyanax mexicanus
ENSAMXG00000017236
I
0.771
GLI2
Monodelphis domestica
ENSMODG00000000245
I
0.771
ENSAMXG00000002477
Astyanax mexicanus
ENSAMXG00000002477
I
0.770
Tal_R009020
Tyto alba
Tal_R009020
I
0.769
Gfo_R013682
Geospiza fortis
Gfo_R013682
I
0.769
ENSAPLG00000005128
Anas platyrhynchos
ENSAPLG00000005128
I
0.769
gli2b
Tetraodon nigroviridis
ENSTNIG00000017828
I
0.769
Myotis_brandtii_Gli2_10019076
Myotis brandtii
Myotis_brandtii_Gli2_10019076
I
0.767
ENSPPYG00000012778
Pongo abelii
ENSPPYG00000012778
I
0.767
GLI2
Pan troglodytes
ENSPTRG00000012413
I
0.767
GLI2
Canis familiaris
ENSCAFG00000004821
I
0.767
GLI2
Homo sapiens
ENSG00000074047
D
0.767
ENSP00000390436-D1
Bos grunniens
ENSP00000390436-D1
I
0.767
GLI2
Bos taurus
ENSBTAG00000011682
I
0.767
GLI2
Macaca mulatta
ENSMMUG00000001868
I
0.767
ENSNLEG00000000944
Nomascus leucogenys
ENSNLEG00000000944
I
0.767
GLI2
Oryctolagus cuniculus
ENSOCUG00000000638
I
0.767
ENSAMEG00000008708
Ailuropoda melanoleuca
ENSAMEG00000008708
I
0.767
Gli2
Mus musculus
ENSMUSG00000048402
D
0.767
ENSPANG00000024168
Papio anubis
ENSPANG00000024168
I
0.767
ENSMPUG00000000986
Mustela putorius furo
ENSMPUG00000000986
I
0.767
ENSMMUP00000002494
Macaca fascicularis
ENSMMUP00000002494
I
0.767
Gli2
Rattus norvegicus
ENSRNOG00000007261
I
0.767
ENSCJAG00000013342
Callithrix jacchus
ENSCJAG00000013342
I
0.767
gli2b
Tetraodon nigroviridis
ENSTNIG00000010251
I
0.767
ENSOARG00000013052
Ovis aries
ENSOARG00000013052
I
0.767
GLI2
Felis catus
ENSFCAG00000014531
I
0.767
GLI2
Dasypus novemcinctus
ENSDNOG00000008730
I
0.767
ENSSTOG00000004582
Ictidomys tridecemlineatus
ENSSTOG00000004582
I
0.767
ENSCSAG00000016668
Chlorocebus sabaeus
ENSCSAG00000016668
I
0.767
GLI2
Sus scrofa
ENSSSCG00000015733
I
0.767
GLI2
Cavia porcellus
ENSCPOG00000015189
I
0.767
ENSLOCG00000011983
Lepisosteus oculatus
ENSLOCG00000011983
I
0.766
GLI2
Procavia capensis
ENSPCAG00000001704
I
0.764
GLI2
Gorilla gorilla
ENSGGOG00000009653
I
0.763
GLI2
Otolemur garnettii
ENSOGAG00000032438
I
0.761
gli1
Danio rerio
ENSDARG00000101244
I
0.761
GLI3
Microcebus murinus
ENSMICG00000010785
I
0.760
GLI3
Echinops telfairi
ENSETEG00000003955
I
0.760
ENSGALG00000014639
Gallus gallus
ENSGALG00000014639
I
0.759
ENSMGAG00000003540
Meleagris gallopavo
ENSMGAG00000003540
I
0.759
GLI2
Tursiops truncatus
ENSTTRG00000002058
I
0.757
ENSECAG00000008016
Equus caballus
ENSECAG00000008016
I
0.757