ENSONIG00000008968 (Oreochromis niloticus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSONIG00000008968 T104107_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KLF6
M04400_2.00
Homo sapiens
NVMCACRCCCH

DGGGYGTGKBN
SELEX
Yin et al.(2017)
KLF6_eDBD_HT-SELEX
0.800 0.841
KLF6
M08857_2.00
Homo sapiens
BYBYVNBCYMCDCCCYBBN

NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_HUMAN.H11MO.0.A
0.800 0.841
Klf6
M08962_2.00
Mus musculus
BYBYVNBCYMCDCCCYBBN

NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_MOUSE.H11MO.0.B
0.800 0.841
KLF6
M10113_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CPBP_Q6
0.800 0.841
KLF6
M04401_2.00
Homo sapiens
NRCCACGCCCH

DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF6_eDBD_Methyl-HT-SELEX
0.800 0.841
KLF3
M04418_2.00
Homo sapiens
RRCCRCGCCCH

DGGGCGYGGYY
SELEX
Yin et al.(2017)
KLF3_FL_HT-SELEX
0.792 0.913
KLF3
M08876_2.00
Homo sapiens
NSNNVCCMCRCCCHBBBBN

NVVVVDGGGYGKGGBNNSN
Misc
Kulakovskiy et al.(2013)
KLF3_HUMAN.H11MO.0.B
0.792 0.913
Klf3
M08982_2.00
Mus musculus
NSNNVCCMCRCCCHBBBBN

NVVVVDGGGYGKGGBNNSN
Misc
Kulakovskiy et al.(2013)
KLF3_MOUSE.H11MO.0.A
0.792 0.913
KLF3
M10172_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$KLF3_Q3_01
0.792 0.913
KLF3
M10173_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$KLF3_Q3
0.792 0.913
KLF3
M04419_2.00
Homo sapiens
DRCCACGCCCH

DGGGCGTGGYH
SELEX
Yin et al.(2017)
KLF3_FL_Methyl-HT-SELEX_1
0.792 0.913
KLF3
M04420_2.00
Homo sapiens
RRSCGCARCCCN

NGGGYTGCGSYY
SELEX
Yin et al.(2017)
KLF3_FL_Methyl-HT-SELEX_2
0.792 0.913
Klf7
M00134_2.00
Mus musculus
NHHMCRCCCH

DGGGYGKDDN
PBM
Badis et al.(2009)
Klf7_0974
0.784 0.841
KLF7
M08298_2.00
Homo sapiens
VVCHMCGCCCH

DGGGCGKDGBB
ChIP-seq
Schmitges et al.(2016)
O75840.MEME
0.784 0.841
Klf12
M00787_2.00
Mus musculus
NNHMCRCCCH

DGGGYGKDNN
PBM
Weirauch et al.(2013)
pTH0977
0.782 0.899
Klf12
M02937_2.00
Mus musculus
GRCCACGCCCWHHHN

NDDDWGGGCGTGGYC
SELEX
Jolma et al.(2013)
Klf12_1
0.782 0.899
KLF12
M04430_2.00
Homo sapiens
DRCCACGCCCH

DGGGCGTGGYH
SELEX
Yin et al.(2017)
KLF12_FL_HT-SELEX
0.782 0.899
KLF12
M08299_2.00
Homo sapiens
SBNVGCCMCGCCCHB

VDGGGCGKGGCBNVS
ChIP-seq
Schmitges et al.(2016)
Q9Y4X4.MEME
0.782 0.899
KLF12
M08879_2.00
Homo sapiens
GCCCCGCCCYB

VRGGGCGGGGC
Misc
Kulakovskiy et al.(2013)
KLF12_HUMAN.H11MO.0.C
0.782 0.899
KLF12
M10186_2.00
Homo sapiens
HMYACDG

CHGTRKD
Transfac
Matys et al.(2006)
V$AP2REP_01
0.782 0.899
KLF12
M04431_2.00
Homo sapiens
RGSCGACGCCCN

NGGGCGTCGSCY
SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_1
0.782 0.899
KLF12
M04432_2.00
Homo sapiens
NRCCACGCCCH

DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_2
0.782 0.899
luna
M03704_2.00
Drosophila melanogaster
RCCACRCCCH

DGGGYGTGGY
SELEX
Nitta et al.(2015)
luna_1
0.768 0.826
KLF4
M04463_2.00
Homo sapiens
NVCCACRCCCH

DGGGYGTGGBN
SELEX
Yin et al.(2017)
KLF4_eDBD_HT-SELEX
0.768 0.826
KLF5
M04410_2.00
Homo sapiens
NMCACRCCCH

DGGGYGTGKN
SELEX
Yin et al.(2017)
KLF5_eDBD_HT-SELEX
0.768 0.826
luna
M06163_2.00
Drosophila melanogaster
RRMHMCRCCC

GGGYGKDKYY
B1H
Zhu et al.(2011)
luna_SANGER_5_FBgn0040765
0.768 0.826
luna
M06164_2.00
Drosophila melanogaster
DRCCMCGCCCHNNN

NNNDGGGCGKGGYH
B1H
Zhu et al.(2011)
luna_SOLEXA_5_FBgn0040765
0.768 0.826
KLF5
M08086_2.00
Homo sapiens
BCCMCDCCCH

DGGGHGKGGV
ChIP-seq
Mathelier et al.(2014)
MA0599.1
0.768 0.826
KLF4
M08091_2.00
Homo sapiens
MCACACCCWNN

NNWGGGTGTGK
ChIP-seq
Mathelier et al.(2014)
MA0039.3
0.768 0.826
Klf4
M08021_2.00
Mus musculus
VRCCMCRCCCH

DGGGYGKGGYB
ChIP-seq
Chen et al.(2011)
SRP000217_Klf4
0.768 0.826
KLF4
M08243_2.00
Homo sapiens
RCCMCRCCCH

DGGGYGKGGY
ChIP-seq
Najafabadi et al.(2015b)
KLF14
0.768 0.826
KLF4
M08894_2.00
Homo sapiens
RCCMCRCCCH

DGGGYGKGGY
Misc
Kulakovskiy et al.(2013)
KLF4_HUMAN.H11MO.0.A
0.768 0.826
KLF5
M08868_2.00
Homo sapiens
NHVNRCCMCDCCCH

DGGGHGKGGYNBDN
Misc
Kulakovskiy et al.(2013)
KLF5_HUMAN.H11MO.0.A
0.768 0.826
Klf4
M08964_2.00
Mus musculus
GCCMCRCCCWBYBBN

NVVRVWGGGYGKGGC
Misc
Kulakovskiy et al.(2013)
KLF4_MOUSE.H11MO.0.A
0.768 0.826
Klf5
M08965_2.00
Mus musculus
KCCMCDCCCHBBBCH

DGVVVDGGGHGKGGM
Misc
Kulakovskiy et al.(2013)
KLF5_MOUSE.H11MO.0.A
0.768 0.826
KLF5
M09502_2.00
Homo sapiens
GCCMCRCCCH

DGGGYGKGGC
Misc
Heinz et al.(2010)
LoVo-KLF5_GSE49402
0.768 0.826
KLF5
M10149_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BTEB2_Q3_01
0.768 0.826
KLF5
M10150_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BTEB2_Q3
0.768 0.826
KLF4
M10217_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_02
0.768 0.826
KLF4
M10218_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_Q3_01
0.768 0.826
KLF4
M10219_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_Q3
0.768 0.826
KLF4
M10220_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_Q4
0.768 0.826
KLF4
M04464_2.00
Homo sapiens
NVCCMCRCCCN

NGGGYGKGGBN
SELEX
Yin et al.(2017)
KLF4_eDBD_Methyl-HT-SELEX
0.768 0.826
KLF5
M04411_2.00
Homo sapiens
NMCACRCCYH

DRGGYGTGKN
SELEX
Yin et al.(2017)
KLF5_eDBD_Methyl-HT-SELEX
0.768 0.826
Klf1
M08099_2.00
Mus musculus
NRCCACACCCW

WGGGTGTGGYN
ChIP-seq
Mathelier et al.(2014)
MA0493.1
0.768 0.797
Klf1
M09008_2.00
Mus musculus
MVMNSCCMCRCCCH

DGGGYGKGGSNKBK
Misc
Kulakovskiy et al.(2013)
KLF1_MOUSE.H11MO.0.A
0.768 0.797
Klf1
M09516_2.00
Mus musculus
DRCCACACCCWN

NWGGGTGTGGYH
Misc
Heinz et al.(2010)
Erythrocyte-Klf1_GSE20478
0.768 0.797
KLF2
M04455_2.00
Homo sapiens
NVCCMCRCCCH

DGGGYGKGGBN
SELEX
Yin et al.(2017)
KLF2_eDBD_HT-SELEX
0.765 0.812
KLF2
M10210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LKLF_Q3
0.765 0.812
KLF2
M10211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LKLF_Q6
0.765 0.812
KLF2
M04456_2.00
Homo sapiens
NVCCMCRCCCN

NGGGYGKGGBN
SELEX
Yin et al.(2017)
KLF2_eDBD_Methyl-HT-SELEX
0.765 0.812
KLF1
M00226_2.00
Homo sapiens
CMCGCCCM

KGGGCGKG
PBM
Barrera et al.(2016)
KLF1_REF
0.765 0.783
KLF1
M08293_2.00
Homo sapiens
NVNNNRCCMCRCCCH

DGGGYGKGGYNNNBN
ChIP-seq
Schmitges et al.(2016)
Q13351.MEME
0.765 0.783
KLF1
M08871_2.00
Homo sapiens
SVNDGCCMCRCCCH

DGGGYGKGGCHNBS
Misc
Kulakovskiy et al.(2013)
KLF1_HUMAN.H11MO.0.A
0.765 0.783
KLF1
M10163_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EKLF_Q5_01
0.765 0.783
KLF1
M10164_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EKLF_Q5
0.765 0.783
KLF1
M00224_2.00
Homo sapiens
YMCGCCCH

DGGGCGKR
PBM
Barrera et al.(2016)
KLF1_H299Y
0.765 0.768
dar1
M06171_2.00
Drosophila melanogaster
RMCACACCCWH

DWGGGTGTGKY
B1H
Zhu et al.(2011)
CG12029_SANGER_10_FBgn0035454
0.758 0.783
dar1
M06172_2.00
Drosophila melanogaster
NNNRCCACRCCCHNN

NNDGGGYGTGGYNNN
B1H
Zhu et al.(2011)
CG12029_SOLEXA_5_FBgn0035454
0.758 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000011276 C2H2 ZF 253 277
ENSONIP00000011276 C2H2 ZF 283 307
ENSONIP00000011276 C2H2 ZF 313 335
ENSONIP00000011277 C2H2 ZF 204 228
ENSONIP00000011277 C2H2 ZF 234 258
ENSONIP00000011277 C2H2 ZF 264 286

Links

Other C2H2 ZF family TFs
Other Oreochromis niloticus TFs

684 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.000
Si039046m.g Setaria italica Si039046m.g I 0.000
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.000
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.000
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.000
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.000
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.000
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.000
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.000
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.000
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
Bo2g028290 Brassica oleracea Bo2g028290 I 0.000
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.000
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.000
Bo3g018490 Brassica oleracea Bo3g018490 I 0.000
Bra006744 Brassica rapa Bra006744 I 0.000
Bra020346 Brassica rapa Bra020346 I 0.000
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.000
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.000
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
F775_22212 Aegilops tauschii F775_22212 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.000
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.000
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.000
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.000
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.000
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.000
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.000
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.000
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.000
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.000
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.000
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.000
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.000
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.000
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.000
MYB64 Arabidopsis thaliana AT5G11050 N 0.000
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.000
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.000
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.000
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.000
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.000
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.000
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.000
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.000
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.000
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.000
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.000
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.000
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.000
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.000
29681.m001315 Ricinus communis 29681.m001315 N 0.000
Cla008304 Citrullus lanatus Cla008304 N 0.000
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.000
TCM_041651 Theobroma cacao TCM_041651 N 0.000
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.000