CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF454
(
Ochotona princeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOPRG00000009035
T104521_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF454
M04571_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_1
0.811
0.960
ZNF454
M04572_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_2
0.811
0.960
ZNF454
M08346_2.00
Homo sapiens
KVVRNCHNYMRGGGCCNDGDGCCWTTB
VAAWGGCHCHNGGCCCYKRNDGNYBBM
ChIP-seq
Schmitges et al.(2016)
Q8N9F8_4-12.RCADE
0.811
0.960
ZNF454
M08256_2.00
Homo sapiens
GWGCYTT
AARGCWC
ChIP-seq
Najafabadi et al.(2015b)
ZNF454
0.811
0.960
ZNF454
M07651_2.00
Homo sapiens
CRKVVRHCCVYCRGGVCCBVGAGCCNKYB
VRMNGGCTCBVGGBCCYGRBRGDYBBMYG
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF454.MEME.OriginalMapping
0.811
0.960
ZNF454
M04573_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_1
0.811
0.960
ZNF454
M04574_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_2
0.811
0.960
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000008255
C2H2 ZF
175
197
FECGECGKSFSKSSTLKKHQKIH
ENSOPRP00000008255
C2H2 ZF
214
236
YECRECGKAFHQSTHLIHHQRIH
ENSOPRP00000008255
C2H2 ZF
242
264
YECKECGKAFSVSSSLTYHQKIH
ENSOPRP00000008255
C2H2 ZF
270
292
FECNLCGKAFIRNIHLSHHHRIH
ENSOPRP00000008255
C2H2 ZF
298
320
FKCDVCEKAFVCRAHLTKHQNIH
ENSOPRP00000008255
C2H2 ZF
326
348
YKCHECGKAFNQSTSFLQHQRIH
ENSOPRP00000008255
C2H2 ZF
354
376
FECNECGKAFRVNSSLTEHQRIH
ENSOPRP00000008255
C2H2 ZF
382
404
YKCSECGKAFRDNSSFARHRKIH
ENSOPRP00000008255
C2H2 ZF
410
432
YRCGLCEKAFRDQSALAQHQRIH
ENSOPRP00000008255
C2H2 ZF
438
460
YACNICEKAFSDHSALTQHKRIH
ENSOPRP00000008255
C2H2 ZF
466
488
YKCKLCGKAFIRSTHLTQHQRIH
ENSOPRP00000008255
C2H2 ZF
494
516
YKCNKCGKAFNQTANLIQHQRHH
Links
Other
C2H2 ZF
family TFs
Other
Ochotona princeps
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy