bcl11aa (Oryzias latipes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSORLG00000001704 T104722_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.803 0.939
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.803 0.939
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.803 0.939
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.799 0.930
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.799 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000002119 C2H2 ZF 441 463
ENSORLP00000002119 C2H2 ZF 469 491
ENSORLP00000002119 C2H2 ZF 794 816
ENSORLP00000002119 C2H2 ZF 822 844
ENSORLP00000002119 C2H2 ZF 852 875
ENSORLP00000002120 C2H2 ZF 243 265
ENSORLP00000002120 C2H2 ZF 271 293
ENSORLP00000002120 C2H2 ZF 602 624
ENSORLP00000002120 C2H2 ZF 630 652
ENSORLP00000002120 C2H2 ZF 660 683

Links

Other C2H2 ZF family TFs
Other Oryzias latipes TFs

Invalid Input OrderBy

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action