CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11aa
(
Oryzias latipes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSORLG00000001704
T104722_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.803
0.939
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.803
0.939
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.803
0.939
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.799
0.930
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.799
0.930
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000002119
C2H2 ZF
441
463
KCCEFCGKAFKFQSNLIVHRRSH
ENSORLP00000002119
C2H2 ZF
469
491
YKCHLCDHACTQASKLKRHMKTH
ENSORLP00000002119
C2H2 ZF
794
816
DTCEFCGKVFKNCSNLTVHRRSH
ENSORLP00000002119
C2H2 ZF
822
844
YKCELCNYACAQSSKLTRHMKTH
ENSORLP00000002119
C2H2 ZF
852
875
YKCEICQMPFSVYSTLEKHMKKWH
ENSORLP00000002120
C2H2 ZF
243
265
KCCEFCGKAFKFQSNLIVHRRSH
ENSORLP00000002120
C2H2 ZF
271
293
YKCHLCDHACTQASKLKRHMKTH
ENSORLP00000002120
C2H2 ZF
602
624
DTCEFCGKVFKNCSNLTVHRRSH
ENSORLP00000002120
C2H2 ZF
630
652
YKCELCNYACAQSSKLTRHMKTH
ENSORLP00000002120
C2H2 ZF
660
683
YKCEICQMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Oryzias latipes
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy