CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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hic1
(
Oryzias latipes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSORLG00000004895
T104766_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hic1
M00141_2.00
Mus musculus
RTGCCMNBN
NVNKGGCAY
PBM
Badis et al.(2009)
Hic1_2816
0.814
0.939
Hic1
M02933_2.00
Mus musculus
RTGCCAVCYBRTGCCAVC
GBTGGCAYVRGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_1
0.814
0.939
Hic1
M02934_2.00
Mus musculus
RTGCCAVCN
NGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_2
0.814
0.939
Hic1
M09003_2.00
Mus musculus
KGGCAMCCH
DGGKTGCCM
Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C
0.814
0.939
HIC2
M02902_2.00
Homo sapiens
RTGCCMVNN
NNBKGGCAY
SELEX
Jolma et al.(2013)
HIC2_1
0.800
0.878
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000006161
C2H2 ZF
417
439
YVCIPCDKGFPSSEQLNAHVETH
ENSORLP00000006161
C2H2 ZF
471
493
YRCSTCEKSYKDPATLRQHEKTH
ENSORLP00000006161
C2H2 ZF
499
521
YPCSICGKKFTQRGTMTRHMRSH
ENSORLP00000006161
C2H2 ZF
527
549
FACDSCGMRFTRQYRLTEHMRIH
ENSORLP00000006161
C2H2 ZF
555
577
YECQVCGGKFAQQRNLISHMKMH
Links
Other
C2H2 ZF
family TFs
Other
Oryzias latipes
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy