CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPSIG00000009843
(
Pelodiscus sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSPSIG00000009843
T107630_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FEZF1
M08307_2.00
Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN
ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE
0.827
1.000
FEZF1
M08889_2.00
Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH
Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C
0.827
1.000
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.806
0.906
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.806
0.906
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.806
0.906
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPSIP00000010850
C2H2 ZF
231
253
FTCEVCGKVFNAHYNLTRHMPVH
ENSPSIP00000010850
C2H2 ZF
259
281
FVCKVCGKGFRQASTLCRHKIIH
ENSPSIP00000010850
C2H2 ZF
287
309
HKCNQCGKAFNRSSTLNTHTRIH
ENSPSIP00000010850
C2H2 ZF
315
337
FVCEFCGKGFHQKGNYKNHKLTH
ENSPSIP00000010850
C2H2 ZF
343
365
FKCNICNKAFHQVYNLTFHMHTH
ENSPSIP00000010850
C2H2 ZF
371
394
FTCPTCGKGFCRNFDLKKHVRKLH
Links
Other
C2H2 ZF
family TFs
Other
Pelodiscus sinensis
TFs
166 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy