CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ENSPSIG00000013071
(
Pelodiscus sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSPSIG00000013071
T107676_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bcl6b
M00128_2.00
Mus musculus
NYYYTYCYWNNN
NNNWRGRARRRN
PBM
Badis et al.(2009)
Bcl6b_0961
0.812
0.896
BCL6B
M02896_2.00
Homo sapiens
TGCTTTCTAGGAATTMM
KKAATTCCTAGAAAGCA
SELEX
Jolma et al.(2013)
BCL6B_1
0.803
0.878
BCL6B
M04499_2.00
Homo sapiens
NNGCTTTCKAGGAAHN
NDTTCCTMGAAAGCNN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_1
0.803
0.878
BCL6B
M04500_2.00
Homo sapiens
NDTTCCTCGATTRCVN
NBGYAATCGAGGAAHN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_2
0.803
0.878
BCL6B
M04501_2.00
Homo sapiens
NHGCTTTCTAGGAAHN
NDTTCCTAGAAAGCDN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_1
0.803
0.878
BCL6B
M04502_2.00
Homo sapiens
NWTTCCTAGATTACRN
NYGTAATCTAGGAAWN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_2
0.803
0.878
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPSIP00000014651
C2H2 ZF
427
449
FKCQLCHSAFRYKGNLASHRAVH
ENSPSIP00000014651
C2H2 ZF
455
477
YRCGLCGAQFNRPANLKTHSRIH
ENSPSIP00000014651
C2H2 ZF
483
505
YKCETCGSSFVQVAHLRAHVLIH
ENSPSIP00000014651
C2H2 ZF
511
533
YPCETCGTRFRHLQTLKSHIRIH
ENSPSIP00000014651
C2H2 ZF
539
562
YHCETCHLHFRHKSQLRLHLRQKH
ENSPSIP00000014663
C2H2 ZF
327
349
FKCQLCHSAFRYKGNLASHRAVH
ENSPSIP00000014663
C2H2 ZF
355
377
YRCGLCGAQFNRPANLKTHSRIH
ENSPSIP00000014663
C2H2 ZF
383
405
YKCETCGSSFVQVAHLRAHVLIH
ENSPSIP00000014663
C2H2 ZF
411
433
YPCETCGTRFRHLQTLKSHIRIH
ENSPSIP00000014663
C2H2 ZF
439
462
YHCETCHLHFRHKSQLRLHLRQKH
Links
Other
C2H2 ZF
family TFs
Other
Pelodiscus sinensis
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy