ENSPSIG00000013079 (Pelodiscus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPSIG00000013079 T107677_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC

GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.827 1.000
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC

GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.827 1.000
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH

DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.806 0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN

NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.806 0.947
BCL11A
M10187_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000014591 C2H2 ZF 428 449
ENSPSIP00000014591 C2H2 ZF 455 477
ENSPSIP00000014591 C2H2 ZF 785 807
ENSPSIP00000014591 C2H2 ZF 813 835
ENSPSIP00000014591 C2H2 ZF 843 866
ENSPSIP00000014598 C2H2 ZF 431 452
ENSPSIP00000014598 C2H2 ZF 458 480
ENSPSIP00000014598 C2H2 ZF 778 800
ENSPSIP00000014598 C2H2 ZF 806 828
ENSPSIP00000014598 C2H2 ZF 836 859

Links

Other C2H2 ZF family TFs
Other Pelodiscus sinensis TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.000
30138.m004061 Ricinus communis 30138.m004061 I 0.000
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.000
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.000
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.000
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.000
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.000
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.000
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.000
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.000
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.000
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.000
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.000
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.000
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.000
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.000
mgf000945m Mimulus guttatus mgf000945m I 0.000
mgf004425m Mimulus guttatus mgf004425m I 0.000
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.000
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.000
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.000
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.000
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.000
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.000
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.000
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.000
PK21701.1 Cannabis sativa PK21701.1 I 0.000
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.000
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.000
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.000
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.000
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.000
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.000
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.000
MDP0000146231 Malus domestica MDP0000146231 I 0.000
MDP0000146415 Malus domestica MDP0000146415 I 0.000
MDP0000147667 Malus domestica MDP0000147667 I 0.000
MDP0000193129 Malus domestica MDP0000193129 I 0.000
MDP0000773068 Malus domestica MDP0000773068 I 0.000
MDP0000919323 Malus domestica MDP0000919323 I 0.000
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.000
29813.m001508 Ricinus communis 29813.m001508 I 0.000
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.000
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.000
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.000
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.000
F775_13266 Aegilops tauschii F775_13266 I 0.000
Bra031049 Brassica rapa Bra031049 I 0.000
Bra025685 Brassica rapa Bra025685 I 0.000
Bra024792 Brassica rapa Bra024792 I 0.000
Bra017404 Brassica rapa Bra017404 I 0.000
Bra016544 Brassica rapa Bra016544 I 0.000
Bra004393 Brassica rapa Bra004393 I 0.000
Bo8g104060 Brassica oleracea Bo8g104060 I 0.000
Bo8g068060 Brassica oleracea Bo8g068060 I 0.000
Bo7g080890 Brassica oleracea Bo7g080890 I 0.000
Bo6g109050 Brassica oleracea Bo6g109050 I 0.000
AGL30 Arabidopsis thaliana AT2G03060 I 0.000
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.000
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.000
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.000
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.000
Pm024895 Prunus mume Pm024895 I 0.000
Pm006479 Prunus mume Pm006479 I 0.000
Cla018884 Citrullus lanatus Cla018884 I 0.000
Cla010361 Citrullus lanatus Cla010361 I 0.000
Ca_18082 Cicer arietinum Ca_18082 I 0.000
Ca_16376 Cicer arietinum Ca_16376 I 0.000
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.000
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.000
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.000
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.000
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.000
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.000
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.000
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.000
TCM_011687 Theobroma cacao TCM_011687 I 0.000
TCM_014051 Theobroma cacao TCM_014051 I 0.000
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.000
Bo9g072860 Brassica oleracea Bo9g072860 N 0.000
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.000