CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF550
(
Pan troglodytes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSPTRG00000011560
T108043_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF550
M07772_2.00
Homo sapiens
TGCCYTAGCMBWSRYTYY
RRARYSWVKGCTARGGCA
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000009623
C2H2 ZF
203
225
YKCKQCGKGFNRKWYLVRHQRVH
ENSPTRP00000009623
C2H2 ZF
231
253
YECNACGKAFSQSSTLIRHYLIH
ENSPTRP00000009623
C2H2 ZF
259
281
YKCLECGKAFKRRSYLMQHHPIH
ENSPTRP00000009623
C2H2 ZF
287
309
YECSQCRKAFTHRSTFIRHNRTH
ENSPTRP00000009623
C2H2 ZF
315
337
FECKECEKAFSNRAHLIQHYIIH
ENSPTRP00000009623
C2H2 ZF
343
365
YDCMACGKAFRCSSELIQHQRIH
ENSPTRP00000009623
C2H2 ZF
371
393
YECTQCGKAFHRSTYLIQHSVIH
ENSPTRP00000009623
C2H2 ZF
399
421
YKCIECGKAFKRRSHLLQHQRVH
Links
Other
C2H2 ZF
family TFs
Other
Pan troglodytes
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy