ZNF550 (Pan troglodytes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPTRG00000011560 T108043_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF550
M07772_2.00
Homo sapiens
TGCCYTAGCMBWSRYTYY

RRARYSWVKGCTARGGCA
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000009623 C2H2 ZF 203 225
ENSPTRP00000009623 C2H2 ZF 231 253
ENSPTRP00000009623 C2H2 ZF 259 281
ENSPTRP00000009623 C2H2 ZF 287 309
ENSPTRP00000009623 C2H2 ZF 315 337
ENSPTRP00000009623 C2H2 ZF 343 365
ENSPTRP00000009623 C2H2 ZF 371 393
ENSPTRP00000009623 C2H2 ZF 399 421

Links

Other C2H2 ZF family TFs
Other Pan troglodytes TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000004910 Ailuropoda melanoleuca ENSAMEG00000004910 I 0.817
ZNF550 Callithrix jacchus ENSCJAG00000000044 I 0.816
ZNF550 Canis familiaris ENSCAFG00000002421 I 0.817
ENSCSAG00000001629 Chlorocebus sabaeus ENSCSAG00000001629 I 0.827
ZNF550 Gorilla gorilla ENSGGOG00000014068 I 0.827
ZNF550 Homo sapiens ENSG00000251369 D 0.827
ENSMMUP00000031401 Macaca fascicularis ENSMMUP00000031401 I 0.827
ZNF550 Macaca mulatta ENSMMUG00000006122 I 0.827
ENSMPUG00000006298 Mustela putorius furo ENSMPUG00000006298 I 0.812
ENSNLEG00000010977 Nomascus leucogenys ENSNLEG00000010977 I 0.827
ENSOARG00000003673 Ovis aries ENSOARG00000003673 I 0.784
ENSTSYG00000004591 Tarsius syrichta ENSTSYG00000004591 I 0.819
ZNF550 Tursiops truncatus ENSTTRG00000000293 I 0.800