ZIC4 (Pan troglodytes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPTRG00000015500 T108123_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH

DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.827 1.000
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH

DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.827 1.000
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH

DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.827 1.000
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK

MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.801 0.920
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG

CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.801 0.920
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH

DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.801 0.920
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH

DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.801 0.920
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.801 0.920
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.801 0.920
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV

BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.801 0.920
ZIC1
M10227_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.801 0.920
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM

KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.801 0.920
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH

DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.801 0.920
Zic2
M00150_2.00
Mus musculus
NCMYVYNRNN

NNYNRBRKGN
PBM
Badis et al.(2009)
Zic2_2895
0.788 0.902
ZIC2
M08233_2.00
Homo sapiens
BBCCTGCWGNB

VNCWGCAGGVV
ChIP-seq
Najafabadi et al.(2015b)
ZIC2
0.788 0.902
Zic2
M09011_2.00
Mus musculus
NRMYHCCTGCTGDGH

DCHCAGCAGGDRKYN
Misc
Kulakovskiy et al.(2013)
ZIC2_MOUSE.H11MO.0.C
0.788 0.902
ZIC2
M10107_2.00
Homo sapiens
VACCMCCCH

DGGGKGGTB
Transfac
Matys et al.(2006)
V$ZIC2_01
0.788 0.902
Zic3
M00151_2.00
Mus musculus
NCMYVBNRNB

VNYNVBRKGN
PBM
Badis et al.(2009)
Zic3_3119
0.785 0.866
ZIC3
M02894_2.00
Homo sapiens
BACCCCCYGCKGYGH

DCRCMGCRGGGGGTV
SELEX
Jolma et al.(2013)
ZIC3_1
0.785 0.866
Zic3
M02936_2.00
Mus musculus
KRCCCCCYGCTGYGH

DCRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
Zic3_1
0.785 0.866
ZIC3
M04491_2.00
Homo sapiens
VGACCCCCYGCTGTGM

KCACAGCRGGGGGTCB
SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX
0.785 0.866
ZIC3
M04493_2.00
Homo sapiens
BACCCCCYGCTGYGH

DCRCAGCRGGGGGTV
SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX
0.785 0.866
ZIC3
M08902_2.00
Homo sapiens
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B
0.785 0.866
Zic3
M09013_2.00
Mus musculus
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A
0.785 0.866
ZIC3
M10229_2.00
Homo sapiens
VRBCMCCCN

NGGGKGVYB
Transfac
Matys et al.(2006)
V$ZIC3_01
0.785 0.866
Zic3
M10359_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC3_07
0.785 0.866
ZIC3
M04492_2.00
Homo sapiens
NKACCCCCTGCTGTGM

KCACAGCAGGGGGTMN
SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX
0.785 0.866
ZIC3
M04494_2.00
Homo sapiens
BRCCCCCTGCTGTGM

KCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX
0.785 0.866
Zic5
M00780_2.00
Mus musculus
BRCCCCCYDS

SHRGGGGGYV
PBM
Weirauch et al.(2013)
pTH2818
0.762 0.893
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000051009 C2H2 ZF 141 162
ENSPTRP00000051009 C2H2 ZF 171 198
ENSPTRP00000051009 C2H2 ZF 204 228
ENSPTRP00000051009 C2H2 ZF 234 258
ENSPTRP00000051009 C2H2 ZF 264 288

Links

Other C2H2 ZF family TFs
Other Pan troglodytes TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28226.m000839 Ricinus communis 28226.m000839 I 0.000
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I 0.000
AMTR_s00024p00225650 Amborella trichopoda AMTR_s00024p00225650 N 0.000
AMTR_s00030p00146410 Amborella trichopoda AMTR_s00030p00146410 I 0.000
Aquca_011_00570 Aquilegia coerulea Aquca_011_00570 N 0.000
Aquca_076_00099 Aquilegia coerulea Aquca_076_00099 I 0.000
cassava25868.m1 Manihot esculenta cassava25868.m1 I 0.000
cassava2758.m1 Manihot esculenta cassava2758.m1 I 0.000
cassava2804.m1 Manihot esculenta cassava2804.m1 N 0.000
cassava29110.valid.m1 Manihot esculenta cassava29110.valid.m1 I 0.000
cassava31571.valid.m1 Manihot esculenta cassava31571.valid.m1 N 0.000
cassava33302.m1 Manihot esculenta cassava33302.m1 I 0.000
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I 0.000
cassava9944.m1 Manihot esculenta cassava9944.m1 I 0.000
Ca_12762 Cicer arietinum Ca_12762 N 0.000
Ciclev10009521m.g Citrus clementina Ciclev10009521m.g N 0.000
Ciclev10022303m.g Citrus clementina Ciclev10022303m.g N 0.000
Ciclev10026498m.g Citrus clementina Ciclev10026498m.g I 0.000
Cla012784 Citrullus lanatus Cla012784 N 0.000
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.000
Eucgr.B01869 Eucalyptus grandis Eucgr.B01869 I 0.000
Eucgr.B01964 Eucalyptus grandis Eucgr.B01964 I 0.000
Eucgr.B02896 Eucalyptus grandis Eucgr.B02896 I 0.000
Eucgr.C00725 Eucalyptus grandis Eucgr.C00725 I 0.000
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I 0.000
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.000
Eucgr.E00407 Eucalyptus grandis Eucgr.E00407 N 0.000
Eucgr.F04422 Eucalyptus grandis Eucgr.F04422 N 0.000
Eucgr.F04423 Eucalyptus grandis Eucgr.F04423 N 0.000
Eucgr.G02195 Eucalyptus grandis Eucgr.G02195 I 0.000
evm.TU.supercontig_126.30 Carica papaya evm.TU.supercontig_126.30 N 0.000
evm.TU.supercontig_126.33 Carica papaya evm.TU.supercontig_126.33 I 0.000
evm.TU.supercontig_25.115 Carica papaya evm.TU.supercontig_25.115 N 0.000
evm.TU.supercontig_46.144 Carica papaya evm.TU.supercontig_46.144 N 0.000
F775_17212 Aegilops tauschii F775_17212 I 0.000
F775_19148 Aegilops tauschii F775_19148 I 0.000
gene07418-v1.0-hybrid Fragaria vesca gene07418-v1.0-hybrid N 0.000
gene08880-v1.0-hybrid Fragaria vesca gene08880-v1.0-hybrid N 0.000
gene15383-v1.0-hybrid Fragaria vesca gene15383-v1.0-hybrid N 0.000
GLYMA01G41610 Glycine max GLYMA01G41610 N 0.000
GLYMA05G04900 Glycine max GLYMA05G04900 I 0.000
GLYMA07G04240 Glycine max GLYMA07G04240 I 0.000
GLYMA11G03770 Glycine max GLYMA11G03770 N 0.000
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.000
GLYMA16G00931 Glycine max GLYMA16G00931 I 0.000
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.000
GLYMA17G15270 Glycine max GLYMA17G15270 I 0.000
Gorai.001G015200 Gossypium raimondii Gorai.001G015200 I 0.000
Gorai.004G196800 Gossypium raimondii Gorai.004G196800 N 0.000
Gorai.007G179300 Gossypium raimondii Gorai.007G179300 I 0.000
Gorai.008G158000 Gossypium raimondii Gorai.008G158000 I 0.000
Gorai.009G040800 Gossypium raimondii Gorai.009G040800 N 0.000
Gorai.009G040900 Gossypium raimondii Gorai.009G040900 N 0.000
Gorai.009G146500 Gossypium raimondii Gorai.009G146500 N 0.000
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I 0.000
Gorai.010G096800 Gossypium raimondii Gorai.010G096800 N 0.000
Gorai.012G011700 Gossypium raimondii Gorai.012G011700 N 0.000
Gorai.013G114900 Gossypium raimondii Gorai.013G114900 I 0.000
GSMUA_Achr11G23500_001 Musa acuminata GSMUA_Achr11G23500_001 N 0.000
GSMUA_Achr2G17960_001 Musa acuminata GSMUA_Achr2G17960_001 N 0.000
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I 0.000
GSMUA_Achr3G27700_001 Musa acuminata GSMUA_Achr3G27700_001 I 0.000
GSMUA_Achr4G21700_001 Musa acuminata GSMUA_Achr4G21700_001 I 0.000
GSMUA_Achr8G14540_001 Musa acuminata GSMUA_Achr8G14540_001 N 0.000
GSMUA_Achr9G16040_001 Musa acuminata GSMUA_Achr9G16040_001 I 0.000
LjSGA_029658.1 Lotus japonicus LjSGA_029658.1 I 0.000
Lus10033438.g Linum usitatissimum Lus10033438.g I 0.000
MDP0000124555 Malus domestica MDP0000124555 N 0.000
MDP0000133817 Malus domestica MDP0000133817 I 0.000
MDP0000140609 Malus domestica MDP0000140609 I 0.000
MDP0000143276 Malus domestica MDP0000143276 I 0.000
MDP0000226215 Malus domestica MDP0000226215 N 0.000
MDP0000253904 Malus domestica MDP0000253904 N 0.000
MDP0000261265 Malus domestica MDP0000261265 I 0.000
MDP0000887107 Malus domestica MDP0000887107 I 0.000
MDP0000931057 Malus domestica MDP0000931057 N 0.000
mgf018735m Mimulus guttatus mgf018735m N 0.000
mgf024953m Mimulus guttatus mgf024953m N 0.000
MTR_4g100720 Medicago truncatula MTR_4g100720 N 0.000
orange1.1g028843m.g Citrus sinensis orange1.1g028843m.g N 0.000
orange1.1g028922m.g Citrus sinensis orange1.1g028922m.g N 0.000
orange1.1g036591m.g Citrus sinensis orange1.1g036591m.g I 0.000
PDK_20s13009436g002 Phoenix dactylifera PDK_20s13009436g002 I 0.000
PGSC0003DMG400030548 Solanum tuberosum PGSC0003DMG400030548 I 0.000
PK05970.1 Cannabis sativa PK05970.1 I 0.000
PK08631.1 Cannabis sativa PK08631.1 N 0.000
PK11717.1 Cannabis sativa PK11717.1 I 0.000
Pm005573 Prunus mume Pm005573 I 0.000
Pm005577 Prunus mume Pm005577 I 0.000
Pm013277 Prunus mume Pm013277 N 0.000
Pm023419 Prunus mume Pm023419 N 0.000
Pm027048 Prunus mume Pm027048 I 0.000
POPTR_0001s16970 Populus trichocarpa POPTR_0001s16970 N 0.000
POPTR_0003s06320 Populus trichocarpa POPTR_0003s06320 N 0.000
POPTR_0003s07680 Populus trichocarpa POPTR_0003s07680 N 0.000
POPTR_0006s23780 Populus trichocarpa POPTR_0006s23780 I 0.000
POPTR_0010s12420 Populus trichocarpa POPTR_0010s12420 I 0.000
POPTR_0017s02990 Populus trichocarpa POPTR_0017s02990 I 0.000
POPTR_0018s08500 Populus trichocarpa POPTR_0018s08500 N 0.000
PRUPE_ppa015883mg Prunus persica PRUPE_ppa015883mg I 0.000
PRUPE_ppa016135mg Prunus persica PRUPE_ppa016135mg N 0.000
PRUPE_ppa017136mg Prunus persica PRUPE_ppa017136mg I 0.000
PRUPE_ppa023789mg Prunus persica PRUPE_ppa023789mg I 0.000
PRUPE_ppa024533mg Prunus persica PRUPE_ppa024533mg N 0.000
PRUPE_ppa026916mg Prunus persica PRUPE_ppa026916mg I 0.000
SapurV1A.0002s0910 Salix purpurea SapurV1A.0002s0910 N 0.000
SapurV1A.0102s0340 Salix purpurea SapurV1A.0102s0340 I 0.000
SapurV1A.0120s0010 Salix purpurea SapurV1A.0120s0010 I 0.000
SapurV1A.0177s0330 Salix purpurea SapurV1A.0177s0330 N 0.000
SapurV1A.0177s0340 Salix purpurea SapurV1A.0177s0340 N 0.000
SapurV1A.0390s0200 Salix purpurea SapurV1A.0390s0200 I 0.000
SapurV1A.0435s0070 Salix purpurea SapurV1A.0435s0070 N 0.000
SapurV1A.0710s0030 Salix purpurea SapurV1A.0710s0030 I 0.000
SapurV1A.0918s0130 Salix purpurea SapurV1A.0918s0130 I 0.000
SapurV1A.1087s0090 Salix purpurea SapurV1A.1087s0090 N 0.000
SapurV1A.1360s0110 Salix purpurea SapurV1A.1360s0110 N 0.000
SapurV1A.1730s0020 Salix purpurea SapurV1A.1730s0020 I 0.000
SapurV1A.4052s0010 Salix purpurea SapurV1A.4052s0010 N 0.000
Solyc05g008250.1 Solanum lycopersicum Solyc05g008250.1 I 0.000
TCM_000535 Theobroma cacao TCM_000535 I 0.000
TCM_015933 Theobroma cacao TCM_015933 I 0.000
TCM_029126 Theobroma cacao TCM_029126 N 0.000
TCM_037379 Theobroma cacao TCM_037379 I 0.000
TCM_037383 Theobroma cacao TCM_037383 I 0.000
TCM_037559 Theobroma cacao TCM_037559 I 0.000
Traes_4DL_26A958CDD Triticum aestivum Traes_4DL_26A958CDD I 0.000
Traes_4DL_8A9D9ACCB Triticum aestivum Traes_4DL_8A9D9ACCB I 0.000
TRIUR3_09734 Triticum urartu TRIUR3_09734 I 0.000
VIT_00s0341g00050 Vitis vinifera VIT_00s0341g00050 N 0.000
VIT_01s0011g04760 Vitis vinifera VIT_01s0011g04760 I 0.000
VIT_04s0008g01870 Vitis vinifera VIT_04s0008g01870 I 0.000
VIT_09s0002g01380 Vitis vinifera VIT_09s0002g01380 N 0.000
VIT_11s0016g01300 Vitis vinifera VIT_11s0016g01300 I 0.000
VIT_17s0000g02650 Vitis vinifera VIT_17s0000g02650 I 0.000
VIT_17s0000g02660 Vitis vinifera VIT_17s0000g02660 I 0.000