CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF250
(
Pteropus vampyrus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSPVAG00000002855
T108484_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.781
0.883
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.781
0.883
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.781
0.883
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.781
0.883
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.781
0.883
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000002695
C2H2 ZF
166
188
FKCVECGKAFGRSSHLLQHQRTH
ENSPVAP00000002695
C2H2 ZF
194
216
YVCGECGKAFSQSSVLSKHRRIH
ENSPVAP00000002695
C2H2 ZF
222
244
YACADCGKAFRVSSDLAQHHKIH
ENSPVAP00000002695
C2H2 ZF
250
272
HACPECRKAFTQLSHLIQHQRIH
ENSPVAP00000002695
C2H2 ZF
278
300
YVCALCGKAFNHSTVLRSHQRVH
ENSPVAP00000002695
C2H2 ZF
306
328
HACAQCGRAFSVKRTLLQHQRVH
ENSPVAP00000002695
C2H2 ZF
334
356
YACSQCGRTFSDRSVLIQHHNVH
ENSPVAP00000002695
C2H2 ZF
362
384
YECGVCGKAFSHRSTLMNHERIH
ENSPVAP00000002695
C2H2 ZF
390
412
YGCYACGKAFVQHSHLIQHQRVH
ENSPVAP00000002695
C2H2 ZF
418
440
FVCGECGHAFSARRSLVQHERIH
ENSPVAP00000002695
C2H2 ZF
446
468
FRCAQCGKAFSLKATLIVHLRTH
ENSPVAP00000002695
C2H2 ZF
474
496
YECGRCGKAFSQYSVLIQHQRIH
ENSPVAP00000002695
C2H2 ZF
502
524
YECAECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Pteropus vampyrus
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy