Zkscan1 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000001335 T108864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zkscan1
M00771_2.00
Mus musculus
NNNHDHDNNN

NNNHDHDNNN
PBM
Weirauch et al.(2013)
pTH2280
0.827 1.000
Zkscan1
M08985_2.00
Mus musculus
DVHDBNCCTACTRTGTGCH

DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_MOUSE.H11MO.0.A
0.827 1.000
ZKSCAN1
M05847_2.00
Homo sapiens
NNNCCTACTAHGH

DCDTAGTAGGNNN
SMiLE-seq
Isakova et al.(2017)
ZKSCAN1
0.825 0.993
ZKSCAN1
M08874_2.00
Homo sapiens
DVHDBNCCTACTRTGTGCH

DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_HUMAN.H11MO.0.B
0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000051042 C2H2 ZF 376 398
ENSRNOP00000051042 C2H2 ZF 404 426
ENSRNOP00000051042 C2H2 ZF 432 454
ENSRNOP00000051042 C2H2 ZF 460 482
ENSRNOP00000051042 C2H2 ZF 488 510
ENSRNOP00000051042 C2H2 ZF 516 538

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_026_00151 Aquilegia coerulea Aquca_026_00151 N 0.000
AT1G13880 Arabidopsis thaliana AT1G13880 N 0.000
AT2G03470 Arabidopsis thaliana AT2G03470 N 0.000
Bo7g081200 Brassica oleracea Bo7g081200 N 0.000
Bo8g065710 Brassica oleracea Bo8g065710 N 0.000
Bo8g107180 Brassica oleracea Bo8g107180 N 0.000
Bostr.0556s0170 Boechera stricta Bostr.0556s0170 N 0.000
Bostr.13671s0067 Boechera stricta Bostr.13671s0067 N 0.000
Bra016722 Brassica rapa Bra016722 N 0.000
Bra026876 Brassica rapa Bra026876 N 0.000
Bra041096 Brassica rapa Bra041096 N 0.000
BRADI4G40450 Brachypodium distachyon BRADI4G40450 N 0.000
Carubv10009267m.g Capsella rubella Carubv10009267m.g N 0.000
cassava12684.valid.m1 Manihot esculenta cassava12684.valid.m1 N 0.000
cassava22481.valid.m1 Manihot esculenta cassava22481.valid.m1 N 0.000
Ca_25548 Cicer arietinum Ca_25548 N 0.000
F775_32528 Aegilops tauschii F775_32528 N 0.000
fgenesh2_kg.1__1502__AT1G13880.1 Arabidopsis lyrata fgenesh2_kg.1__1502__AT1G13880.1 N 0.000
fgenesh2_kg.5__246__AT2G03470.1 Arabidopsis lyrata fgenesh2_kg.5__246__AT2G03470.1 N 0.000
gene25773-v1.0-hybrid Fragaria vesca gene25773-v1.0-hybrid N 0.000
GLYMA07G35340 Glycine max GLYMA07G35340 N 0.000
GLYMA20G03230 Glycine max GLYMA20G03230 N 0.000
GRMZM2G100431 Zea mays GRMZM2G100431 N 0.000
GSMUA_Achr1G24520_001 Musa acuminata GSMUA_Achr1G24520_001 N 0.000
GSMUA_Achr6G24610_001 Musa acuminata GSMUA_Achr6G24610_001 N 0.000
Lus10004658.g Linum usitatissimum Lus10004658.g N 0.000
MDP0000658202 Malus domestica MDP0000658202 N 0.000
MTR_3g023780 Medicago truncatula MTR_3g023780 N 0.000
orange1.1g039760m.g Citrus sinensis orange1.1g039760m.g N 0.000
Pavir.Ia04672 Panicum virgatum Pavir.Ia04672 N 0.000
Pavir.J38487 Panicum virgatum Pavir.J38487 N 0.000
PK21343.1 Cannabis sativa PK21343.1 N 0.000
POPTR_0010s16720 Populus trichocarpa POPTR_0010s16720 N 0.000
SapurV1A.0072s0050 Salix purpurea SapurV1A.0072s0050 N 0.000
Sb01g043100 Sorghum bicolor Sb01g043100 N 0.000
Si038913m.g Setaria italica Si038913m.g N 0.000
TCM_014163 Theobroma cacao TCM_014163 N 0.000
Thhalv10005386m.g Eutrema salsugineum Thhalv10005386m.g N 0.000
Traes_1BS_2D464CB3E Triticum aestivum Traes_1BS_2D464CB3E N 0.000
Traes_5AS_C458D04EB Triticum aestivum Traes_5AS_C458D04EB N 0.000
Traes_5BS_199E47242 Triticum aestivum Traes_5BS_199E47242 N 0.000
Traes_5DS_ED5D9E7C8 Triticum aestivum Traes_5DS_ED5D9E7C8 N 0.000
Traes_6DL_95CDF7628 Triticum aestivum Traes_6DL_95CDF7628 N 0.000
TRIUR3_27708 Triticum urartu TRIUR3_27708 N 0.000
VIT_14s0108g01580 Vitis vinifera VIT_14s0108g01580 N 0.000
VIT_17s0000g06810 Vitis vinifera VIT_17s0000g06810 N 0.000