CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zkscan1
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000001335
T108864_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zkscan1
M00771_2.00
Mus musculus
NNNHDHDNNN
NNNHDHDNNN
PBM
Weirauch et al.(2013)
pTH2280
0.827
1.000
Zkscan1
M08985_2.00
Mus musculus
DVHDBNCCTACTRTGTGCH
DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_MOUSE.H11MO.0.A
0.827
1.000
ZKSCAN1
M05847_2.00
Homo sapiens
NNNCCTACTAHGH
DCDTAGTAGGNNN
SMiLE-seq
Isakova et al.(2017)
ZKSCAN1
0.825
0.993
ZKSCAN1
M08874_2.00
Homo sapiens
DVHDBNCCTACTRTGTGCH
DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_HUMAN.H11MO.0.B
0.825
0.993
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000051042
C2H2 ZF
376
398
HRCDECGKCFTRSSSLIRHKIIH
ENSRNOP00000051042
C2H2 ZF
404
426
YECNECGKAFSLNSNLVLHQRIH
ENSRNOP00000051042
C2H2 ZF
432
454
HECNECGKAFSHSSNLILHQRIH
ENSRNOP00000051042
C2H2 ZF
460
482
YECNECGKAFSQSSDLTKHQRIH
ENSRNOP00000051042
C2H2 ZF
488
510
YECSECGKAFNRNSYLILHRRIH
ENSRNOP00000051042
C2H2 ZF
516
538
YKCTKCGKAFTRSSTLTLHHRIH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy