Bcl6 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000001843 T108870_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BCL6
M00228_2.00
Homo sapiens
NNVNDVRANN

NNTYBHNBNN
PBM
Barrera et al.(2016)
BCL6_REF
0.827 1.000
BCL6
M04424_2.00
Homo sapiens
NYGCTTTCKAGGAAHN

NDTTCCTMGAAAGCRN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1
0.827 1.000
BCL6
M04425_2.00
Homo sapiens
NDTTCCTMGAWWRCVN

NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2
0.827 1.000
Bcl6
M08097_2.00
Mus musculus
NDCYYTCYAGGAAN

NTTCCTRGARRGHN
ChIP-seq
Mathelier et al.(2014)
MA0463.1
0.827 1.000
Bcl6
M08024_2.00
Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH

DRRDRRVNRRRRRRNRDGADSWVWDDVNRD
ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim
0.827 1.000
BCL6
M08877_2.00
Homo sapiens
NNMYYTCYAGGAA

TTCCTRGARRKNN
Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A
0.827 1.000
Bcl6
M08972_2.00
Mus musculus
NNMTYTCYAGGAA

TTCCTRGARAKNN
Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A
0.827 1.000
Bcl6
M09513_2.00
Mus musculus
NNNNYTTCYWGGAAN

NTTCCWRGAARNNNN
Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578
0.827 1.000
BCL6
M10180_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_01
0.827 1.000
BCL6
M10181_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_02
0.827 1.000
BCL6
M10182_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3_01
0.827 1.000
BCL6
M10183_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3
0.827 1.000
BCL6
M10184_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q6
0.827 1.000
BCL6
M04426_2.00
Homo sapiens
NTGCTTTCTAGGAAHN

NDTTCCTAGAAAGCAN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1
0.827 1.000
BCL6
M04427_2.00
Homo sapiens
NDTTCCTMGAWWRCVN

NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2
0.827 1.000
BCL6
M00227_2.00
Homo sapiens
NTAATTRWNN

NNWYAATTAN
PBM
Barrera et al.(2016)
BCL6_H676Y
0.821 0.964
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002522 C2H2 ZF 519 542
ENSRNOP00000002522 C2H2 ZF 547 569
ENSRNOP00000002522 C2H2 ZF 575 597
ENSRNOP00000002522 C2H2 ZF 603 625
ENSRNOP00000002522 C2H2 ZF 631 653
ENSRNOP00000002522 C2H2 ZF 659 682

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

Invalid Input OrderBy

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action