Gfi1 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000002042 T108872_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
putative transcription factor that contains novel zinc-finger motif; may regulate the expression of genes active during mitosis [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.827 1.000
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.827 1.000
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.827 1.000
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.827 1.000
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.827 1.000
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.827 1.000
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.827 1.000
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.825 0.993
GFI1
M00237_2.00
Homo sapiens
ATATCAVD

HBTGATAT
PBM
Barrera et al.(2016)
GFI1_N382S
0.790 0.993
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.781 0.877
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.781 0.877
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.781 0.877
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.781 0.877
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.781 0.877
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.781 0.877
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.781 0.877
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.781 0.877
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.781 0.877
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.774 0.848
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.771 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002807 C2H2 ZF 256 279
ENSRNOP00000002807 C2H2 ZF 285 307
ENSRNOP00000002807 C2H2 ZF 313 335
ENSRNOP00000002807 C2H2 ZF 341 363
ENSRNOP00000002807 C2H2 ZF 369 391
ENSRNOP00000002807 C2H2 ZF 397 420

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.827
GFI1 Felis catus ENSFCAG00000005914 I 0.827
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.827
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.827
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.827
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.827
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.827
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.827
GFI1 Canis familiaris ENSCAFG00000020155 I 0.827
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.827
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.827
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.827
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.827
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.827
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.827
GFI1 Homo sapiens ENSG00000162676 D 0.827
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.827
Gfi1 Mus musculus ENSMUSG00000029275 D 0.827
GFI1 Equus caballus ENSECAG00000006647 I 0.825
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.825
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.825
GFI1 Sus scrofa ENSSSCG00000006902 I 0.825
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.825
GFI1 Bos taurus ENSBTAG00000016723 I 0.825
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.825
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.825
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.825
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.825
Tal_R006464 Tyto alba Tal_R006464 I 0.824
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.824
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.824
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.824
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.824
Aan_R000889 Calypte anna Aan_R000889 I 0.824
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.824
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.824
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.824
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.824
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.824
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.823
gfi1ab Danio rerio ENSDARG00000044457 I 0.823
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.822
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.822
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.822
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.821
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.820
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.820
gfi1aa Danio rerio ENSDARG00000020746 I 0.817
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.815
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.814
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.814
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.814
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.812
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.807
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.807
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.801
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.801
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.801
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.801
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.799
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.791
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.787
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.786
Aan_R008865 Calypte anna Aan_R008865 I 0.786
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.786
Tal_R001363 Tyto alba Tal_R001363 I 0.786
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.786
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.786
GFI1B Gallus gallus ENSGALG00000003478 I 0.786
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.786
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.786
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.784
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.784
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.784
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.784
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.784
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.783
GFI1B Sus scrofa ENSSSCG00000005737 I 0.782
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.782
gfi1b Danio rerio ENSDARG00000079947 I 0.782
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.782
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.782
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.782
GFI1B Canis familiaris ENSCAFG00000019877 I 0.782
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.782
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.782
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.782
GFI1B Felis catus ENSFCAG00000027147 I 0.782
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.781
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.781
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.781
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.781
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.781
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.781
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.781
GFI1B Homo sapiens ENSG00000165702 D 0.781
Gfi1b Mus musculus ENSMUSG00000026815 D 0.781
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.781
GFI1B Equus caballus ENSECAG00000008127 I 0.781
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.781
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.781
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.781
GFI1B Procavia capensis ENSPCAG00000012329 I 0.781
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.777
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.776
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.775
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.774
MDOA011065 Musca domestica MDOA011065 I 0.774
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.774
GG10437 Drosophila erecta FBgn0102746 I 0.774
GH13715 Drosophila grimshawi FBgn0121191 I 0.774
GF15430 Drosophila ananassae FBgn0092455 I 0.774
sens-2 Drosophila melanogaster FBgn0051632 D 0.774
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.774
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.774
GI23984 Drosophila mojavensis FBgn0146708 I 0.774
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.774
GJ21268 Drosophila virilis FBgn0208401 I 0.774
GM16223 Drosophila sechellia FBgn0171139 I 0.774
GE14143 Drosophila yakuba FBgn0231766 I 0.774
GL26188 Drosophila persimilis FBgn0163770 I 0.774
GK24242 Drosophila willistoni FBgn0226203 I 0.774
gfi1b Oryzias latipes ENSORLG00000014390 I 0.772
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.772
GFI1B Bos taurus ENSBTAG00000012772 I 0.772
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.771
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.771
LotgiG129344 Lottia gigantea LotgiG129344 I 0.769
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.767
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.767
LotgiG83709 Lottia gigantea LotgiG83709 I 0.767
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.766
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.766
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.765
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.764
CapteG45287 Capitella teleta CapteG45287 I 0.760