CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zfp354a
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000003634
T108883_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF354A
M08331_2.00
Homo sapiens
RTTTARDCCATTTAY
RTAAATGGHYTAAAY
ChIP-seq
Schmitges et al.(2016)
O60765_5-9.RCADE
0.813
0.967
ZNF354A
M07622_2.00
Homo sapiens
RTTTARHCCATTTAC
GTAAATGGDYTAAAY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF354A.RCADE.OriginalMapping
0.813
0.967
ZNF354A
M08914_2.00
Homo sapiens
DTTYHDNYCHTTTMYWTTTADTGW
WCAHTAAAWRKAAADGRNHDRAAH
Misc
Kulakovskiy et al.(2013)
Z354A_HUMAN.H11MO.0.C
0.813
0.967
ZNF354B
M07653_2.00
Homo sapiens
RDWTAKYYCMTT
AAKGRRMTAWHY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF354B.RCADE.ReprocessedData
0.767
0.916
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000049437
C2H2 ZF
188
210
YKCSMCEKTFINTSSLRKHEKNH
ENSRNOP00000049437
C2H2 ZF
216
238
FKCKECSKAFSQSSALIQHQITH
ENSRNOP00000049437
C2H2 ZF
244
266
YVCKECGKAFTLSTSLYKHLRTH
ENSRNOP00000049437
C2H2 ZF
272
294
YRCKECGKSFGQRSGLFIHQKIH
ENSRNOP00000049437
C2H2 ZF
325
347
YLCNECGNTFKSSSSLRYHQRIH
ENSRNOP00000049437
C2H2 ZF
353
375
FRCSECGRAFSQSASLIQHERIH
ENSRNOP00000049437
C2H2 ZF
381
403
YRCGECGKGFTSISRLNRHRIIH
ENSRNOP00000049437
C2H2 ZF
409
431
YNCNECGKALSSHSTLIIHERIH
ENSRNOP00000049437
C2H2 ZF
437
459
CKCKVCGKAFRQSSALIQHQRMH
ENSRNOP00000049437
C2H2 ZF
465
487
YKCNECGKTFRCNSSLSNHQRIH
ENSRNOP00000049437
C2H2 ZF
493
515
YQCIECGMSFGQSSALIQHRRIH
ENSRNOP00000049437
C2H2 ZF
521
543
FKCNTCGKTFRQSSSRIAHQRIH
ENSRNOP00000049437
C2H2 ZF
549
571
YECNTCGKLFNYRSSLTNHYKIH
ENSRNOP00000070798
C2H2 ZF
142
164
YKCSMCEKTFINTSSLRKHEKNH
ENSRNOP00000070798
C2H2 ZF
170
192
FKCKECSKAFSQSSALIQHQITH
ENSRNOP00000070798
C2H2 ZF
198
220
YVCKECGKAFTLSTSLYKHLRTH
ENSRNOP00000070798
C2H2 ZF
226
248
YRCKECGKSFGQRSGLFIHQKIH
ENSRNOP00000070798
C2H2 ZF
279
301
YLCNECGNTFKSSSSLRYHQRIH
ENSRNOP00000070798
C2H2 ZF
307
329
FRCSECGRAFSQSASLIQHERIH
ENSRNOP00000070798
C2H2 ZF
335
357
YRCGECGKGFTSISRLNRHRIIH
ENSRNOP00000070798
C2H2 ZF
363
385
YNCNECGKALSSHSTLIIHERIH
ENSRNOP00000070798
C2H2 ZF
391
413
CKCKVCGKAFRQSSALIQHQRMH
ENSRNOP00000070798
C2H2 ZF
419
441
YKCNECGKTFRCNSSLSNHQRIH
ENSRNOP00000070798
C2H2 ZF
447
469
YQCIECGMSFGQSSALIQHRRIH
ENSRNOP00000070798
C2H2 ZF
475
497
FKCNTCGKTFRQSSSRIAHQRIH
ENSRNOP00000070798
C2H2 ZF
503
525
YECNTCGKLFNYRSSLTNHYKIH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy