Zfp18 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000003981 T108884_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF18 (zinc finger protein 18). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF18
M08316_2.00 		Homo sapiens
NSNRTTCACACY
RGTGTGAAYNSN		 ChIP-seq
Schmitges et al.(2016)
P17022.MEME 		0.806 0.956
ZNF18
M07602_2.00 		Homo sapiens
RGTGTGARBNBNNNN
NNNNVNVYTCACACY		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF18.ChIP-seq.ReprocessedData 		0.806 0.956
ZNF18
M08901_2.00 		Homo sapiens
NVDVTTCACACY
RGTGTGAABHBN		 Misc
Kulakovskiy et al.(2013)
ZNF18_HUMAN.H11MO.0.C 		0.806 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000005518 C2H2 ZF 416 437
ENSRNOP00000005518 C2H2 ZF 443 465
ENSRNOP00000005518 C2H2 ZF 471 493
ENSRNOP00000005518 C2H2 ZF 499 521
ENSRNOP00000005518 C2H2 ZF 527 549

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

Invalid Input OrderBy

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action