CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Prdm4
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000004962
T108897_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.824
0.993
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.824
0.993
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.824
0.993
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.824
0.993
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000006886
C2H2 ZF
586
608
WKCSMCPQAFISPSKLHVHFMGH
ENSRNOP00000006886
C2H2 ZF
614
636
HKCDFCSKAFSDPSNLRTHLKIH
ENSRNOP00000006886
C2H2 ZF
642
664
YRCTLCDKSFTQKAHLESHMVIH
ENSRNOP00000006886
C2H2 ZF
670
692
LKCDYCDKLFMRRQDLKQHVLIH
ENSRNOP00000006886
C2H2 ZF
698
720
IKCPKCDKLFLRTNHLKKHLNSH
ENSRNOP00000006886
C2H2 ZF
726
747
YVCEKCTKAYLTKYHLTRHLKA
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy