CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bcl11b
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000005776
T108906_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.827
1.000
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.827
1.000
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.806
0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.806
0.947
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.806
0.947
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000007602
C2H2 ZF
464
485
SCEFCGKTFKFQSNLIVHRRSH
ENSRNOP00000007602
C2H2 ZF
491
513
YKCQLCDHACSQASKLKRHMKTH
ENSRNOP00000007602
C2H2 ZF
823
845
DTCEYCGKVFKNCSNLTVHRRSH
ENSRNOP00000007602
C2H2 ZF
851
873
YKCELCNYACAQSSKLTRHMKTH
ENSRNOP00000007602
C2H2 ZF
881
904
YRCDICQMPFSVYSTLEKHMKKWH
ENSRNOP00000068641
C2H2 ZF
423
444
SCEFCGKTFKFQSNLIVHRRSH
ENSRNOP00000068641
C2H2 ZF
450
472
YKCQLCDHACSQASKLKRHMKTH
ENSRNOP00000068641
C2H2 ZF
782
804
DTCEYCGKVFKNCSNLTVHRRSH
ENSRNOP00000068641
C2H2 ZF
810
832
YKCELCNYACAQSSKLTRHMKTH
ENSRNOP00000068641
C2H2 ZF
840
863
YRCDICQMPFSVYSTLEKHMKKWH
ENSRNOP00000069404
C2H2 ZF
355
376
SCEFCGKTFKFQSNLIVHRRSH
ENSRNOP00000069404
C2H2 ZF
382
404
YKCQLCDHACSQASKLKRHMKTH
ENSRNOP00000069404
C2H2 ZF
714
736
DTCEYCGKVFKNCSNLTVHRRSH
ENSRNOP00000069404
C2H2 ZF
742
764
YKCELCNYACAQSSKLTRHMKTH
ENSRNOP00000069404
C2H2 ZF
772
795
YRCDICQMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy