CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Klf10
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000006118
T108909_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KLF10
M04489_2.00
Homo sapiens
RMCACRCCCMYVHCACRCCCMC
GKGGGYGTGDBRKGGGYGTGKY
SELEX
Yin et al.(2017)
KLF10_eDBD_HT-SELEX
0.827
0.986
KLF10
M08246_2.00
Homo sapiens
RCCMCRCCCH
DGGGYGKGGY
ChIP-seq
Najafabadi et al.(2015b)
KLF10
0.827
0.986
KLF10
M08317_2.00
Homo sapiens
SMCMCRCCCMYNBSN
NSVNRKGGGYGKGKS
ChIP-seq
Schmitges et al.(2016)
Q13118.MEME
0.827
0.986
KLF10
M10228_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TIEG1_Q6
0.827
0.986
KLF10
M04490_2.00
Homo sapiens
RMCACRCCCMYGMCACRCCCHC
GDGGGYGTGKCRKGGGYGTGKY
SELEX
Yin et al.(2017)
KLF10_eDBD_Methyl-HT-SELEX
0.827
0.986
KLF11
M00242_2.00
Homo sapiens
MCGCCCCC
GGGGGCGK
PBM
Barrera et al.(2016)
KLF11_REF
0.775
0.855
KLF11
M04554_2.00
Homo sapiens
VMCMCRCCCMYNMCACGCCCMC
GKGGGCGTGKNRKGGGYGKGKB
SELEX
Yin et al.(2017)
KLF11_eDBD_HT-SELEX
0.775
0.855
KLF11
M10261_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FKLF_Q5
0.775
0.855
KLF11
M00241_2.00
Homo sapiens
MCGCCCMC
GKGGGCGK
PBM
Barrera et al.(2016)
KLF11_R402Q
0.775
0.855
KLF11
M04555_2.00
Homo sapiens
VMCMCRCCCHYNHCACGCCCMC
GKGGGCGTGDNRDGGGYGKGKB
SELEX
Yin et al.(2017)
KLF11_eDBD_Methyl-HT-SELEX
0.775
0.855
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000008350
C2H2 ZF
366
393
VRSHICSHPGCGKTYFKSSHLKAHVRTH
ENSRNOP00000008350
C2H2 ZF
399
423
FSCSWKGCERRFARSDELSRHRRTH
ENSRNOP00000008350
C2H2 ZF
429
451
FACPMCDRRFMRSDHLTKHARRH
ENSRNOP00000070160
C2H2 ZF
350
377
VRSHICSHPGCGKTYFKSSHLKAHVRTH
ENSRNOP00000070160
C2H2 ZF
383
407
FSCSWKGCERRFARSDELSRHRRTH
ENSRNOP00000070160
C2H2 ZF
413
435
FACPMCDRRFMRSDHLTKHARRH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy