CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bnc2
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000006553
T108910_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including endochondral bone growth; roof of mouth development; and tongue development. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human BNC2 (basonuclin 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bnc1
M10340_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BNC1_01
0.798
0.930
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000063132
C2H2 ZF
449
471
FCNACGKTFYDKGTLKIHYNAVH
ENSRNOP00000063132
C2H2 ZF
476
498
HRCTIEGCNMVFSSLRSRNRHSA
ENSRNOP00000075619
C2H2 ZF
473
495
FCNACGKTFYDKGTLKIHYNAVH
ENSRNOP00000075619
C2H2 ZF
500
522
HRCTIEGCNMVFSSLRSRNRHSA
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy