CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LOC102555183
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000006796
T108916_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF146
M08329_2.00
Homo sapiens
GCTGHVTARTAYTCC
GGARTAYTABDCAGC
ChIP-seq
Schmitges et al.(2016)
Q15072_6-10.RCADE
0.820
0.978
ZNF146
M08913_2.00
Homo sapiens
TTTTYATGGCTGHRTARTATTCCA
TGGAATAYTAYDCAGCCATRAAAA
Misc
Kulakovskiy et al.(2013)
OZF_HUMAN.H11MO.0.C
0.820
0.978
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000008889
C2H2 ZF
16
38
FACKVCGILFSHKSNLTEHEHFH
ENSRNOP00000008889
C2H2 ZF
44
66
FECNECGKAFSQKQYVIKHQNTH
ENSRNOP00000008889
C2H2 ZF
72
94
FECNDCGKSFSQKENLLTHQKIH
ENSRNOP00000008889
C2H2 ZF
100
122
FECKDCGKAFIQKSNLIRHQRTH
ENSRNOP00000008889
C2H2 ZF
128
150
FICKECGKTFSGKSNLTEHEKIH
ENSRNOP00000008889
C2H2 ZF
156
178
FKCNECGTAFGQKKYLIKHQNIH
ENSRNOP00000008889
C2H2 ZF
184
206
YECNECGKAFSQRTSLIVHVRIH
ENSRNOP00000008889
C2H2 ZF
212
234
YECNVCGKAFSQSSSLTVHVRSH
ENSRNOP00000008889
C2H2 ZF
240
262
YGCNECGKAFSQFSTLALHLRIH
ENSRNOP00000008889
C2H2 ZF
268
290
YQCSECGKAFSQKSHHIRHQKIH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy