CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zfp12
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000006958
T108919_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF12
M04515_2.00
Homo sapiens
NVYGCKRTAACAARYAKSMCC
GGKSMTRYTTGTTAYMGCRBN
SELEX
Yin et al.(2017)
ZNF12_eDBD_HT-SELEX
0.800
0.957
ZNF12
M07611_2.00
Homo sapiens
BNYBYSTYNYNGCNGCNS
SNGCNGCNRNRASRVRNV
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF12.RCADE.OriginalMapping
0.800
0.957
ZNF12
M04516_2.00
Homo sapiens
NVYGCWRTAACGAGYABCMCC
GGKGVTRCTCGTTAYWGCRBN
SELEX
Yin et al.(2017)
ZNF12_eDBD_Methyl-HT-SELEX
0.800
0.957
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000038579
C2H2 ZF
174
196
YDCQQCGKSFCKRSKFIIHQRTH
ENSRNOP00000038579
C2H2 ZF
202
224
FKCNQCGKSFCQKGTLTVHQRTH
ENSRNOP00000038579
C2H2 ZF
230
252
YECTECGKTFYQKLHLIQHQRTH
ENSRNOP00000038579
C2H2 ZF
258
280
YKCSYCGKSFCQKTHLTQHQRTH
ENSRNOP00000038579
C2H2 ZF
286
308
YVCHDCGKTFSQKSALNDHQKIH
ENSRNOP00000038579
C2H2 ZF
314
336
YKCSECGKCFCRKSTLTTHMRTH
ENSRNOP00000038579
C2H2 ZF
342
364
YECNECGKFFSRLSYLTVHYRTH
ENSRNOP00000038579
C2H2 ZF
370
392
YECTECGKTFYLNSALMRHQRVH
ENSRNOP00000038579
C2H2 ZF
398
420
YECTECGKLFSQLSYLTVHHRTH
ENSRNOP00000038579
C2H2 ZF
426
448
YECSECGKTFYQNSALCRHRRIH
ENSRNOP00000038579
C2H2 ZF
454
476
YECYICGKFFSQMSYLTIHHRIH
ENSRNOP00000038579
C2H2 ZF
482
504
YECSECGKTFCQNSALNRHQRTH
ENSRNOP00000038579
C2H2 ZF
510
532
YECYECGKCFSQMSYLTIHHRIH
ENSRNOP00000038579
C2H2 ZF
538
560
FECNECGKAFSRMSYLTVHCRTH
ENSRNOP00000038579
C2H2 ZF
566
588
YECTECGKKFYHKSAFNSHQRTH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy