CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zfp41
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000007489
T108927_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Orthologous to human ZFP41 (ZFP41 zinc finger protein). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFP41
M04597_2.00
Homo sapiens
NGCTAACTCTCCRYN
NRYGGAGAGTTAGCN
SELEX
Yin et al.(2017)
ZFP41_FL_HT-SELEX
0.802
0.913
ZFP41
M04598_2.00
Homo sapiens
BGCTAACTCTCCRCN
NGYGGAGAGTTAGCV
SELEX
Yin et al.(2017)
ZFP41_FL_Methyl-HT-SELEX
0.802
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000009823
C2H2 ZF
87
109
YECSECGRIFKHKTDHIRHQRVH
ENSRNOP00000009823
C2H2 ZF
115
137
FKCDQCGKTFRHSSDVTKHQRIH
ENSRNOP00000009823
C2H2 ZF
143
165
FKCGECGKAFNCGSNLLKHQKTH
ENSRNOP00000009823
C2H2 ZF
171
193
YGCEECGKSFAYSSCLIRHRKRH
ENSRNOP00000068439
C2H2 ZF
87
109
YECSECGRIFKHKTDHIRHQRVH
ENSRNOP00000068439
C2H2 ZF
115
137
FKCDQCGKTFRHSSDVTKHQRIH
ENSRNOP00000068439
C2H2 ZF
143
165
FKCGECGKAFNCGSNLLKHQKTH
ENSRNOP00000068439
C2H2 ZF
171
193
YGCEECGKSFAYSSCLIRHRKRH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy