CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bnc1
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000019770
T109077_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity and rDNA binding activity. Predicted to be involved in positive regulation of oocyte maturation and positive regulation of transcription by RNA polymerase I. Predicted to act upstream of or within several processes, including positive regulation of epithelial cell proliferation; regulation of transcription by RNA polymerase II; and wound healing. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 16. Orthologous to human BNC1 (basonuclin 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bnc1
M10340_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BNC1_01
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000062098
C2H2 ZF
355
377
FCTACEKTFYDKGTLKIHYNAVH
ENSRNOP00000062098
C2H2 ZF
382
404
HKCTIEGCNMVFSSLRSRNRHSA
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
120 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy