CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
LOC103690114
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000020774
T109085_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF383
M07689_2.00
Homo sapiens
RCCCNGVYYCCTKCCMYSTYBYBSCTC
GAGSVRVRASRKGGMAGGRRBCNGGGY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF383.RCADE.ReprocessedData
0.774
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000064739
C2H2 ZF
223
245
YECKKCRKVFTQNSQFIQHQRIH
ENSRNOP00000064739
C2H2 ZF
251
273
YECKECGKFFSCGSHVTRHLKIH
ENSRNOP00000064739
C2H2 ZF
279
301
FECKDCGKAFSCSSYLSQHQRIH
ENSRNOP00000064739
C2H2 ZF
307
329
YECKDCGKAFSYCSNLIDHQRIH
ENSRNOP00000064739
C2H2 ZF
335
357
YACKVCGKAFTKSSQLFQHVRVH
ENSRNOP00000064739
C2H2 ZF
363
385
YECKECGKAFTQSSKLVQHQRIH
ENSRNOP00000064739
C2H2 ZF
391
413
YECKECGKAFSSGSALTNHQRIH
ENSRNOP00000064739
C2H2 ZF
419
441
YECKDCGKAFTQSSQLRQHQRIH
ENSRNOP00000064739
C2H2 ZF
447
469
FECLECGKAFTQNSQLFQHQRVH
ENSRNOP00000064739
C2H2 ZF
475
497
YECNKCGKAFNKCSNLTRHLRTH
ENSRNOP00000064739
C2H2 ZF
503
525
CSCNECGKTFSNESELIRHQEVH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy