CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Znf454
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000022971
T109106_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF454
M04571_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_1
0.773
0.909
ZNF454
M04572_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_2
0.773
0.909
ZNF454
M08346_2.00
Homo sapiens
KVVRNCHNYMRGGGCCNDGDGCCWTTB
VAAWGGCHCHNGGCCCYKRNDGNYBBM
ChIP-seq
Schmitges et al.(2016)
Q8N9F8_4-12.RCADE
0.773
0.909
ZNF454
M07651_2.00
Homo sapiens
CRKVVRHCCVYCRGGVCCBVGAGCCNKYB
VRMNGGCTCBVGGBCCYGRBRGDYBBMYG
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF454.MEME.OriginalMapping
0.773
0.909
ZNF454
M04573_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_1
0.773
0.909
ZNF454
M04574_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_2
0.773
0.909
ZNF454
M08256_2.00
Homo sapiens
GWGCYTT
AARGCWC
ChIP-seq
Najafabadi et al.(2015b)
ZNF454
0.773
0.909
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000031832
C2H2 ZF
134
156
FECNRCGKVFSKGSILKKHQKLH
ENSRNOP00000031832
C2H2 ZF
173
195
YECRECGKTFHQSTHLIHHQRVH
ENSRNOP00000031832
C2H2 ZF
201
223
YECKDCGKAFSVSSSLTYHQKIH
ENSRNOP00000031832
C2H2 ZF
229
251
FECNICGKAFIRNIHLSHHHRIH
ENSRNOP00000031832
C2H2 ZF
257
279
FQCNVCDKAFVCRAHLTKHQNIH
ENSRNOP00000031832
C2H2 ZF
285
307
YKCSECGKAFGQSTSFLQHQRIH
ENSRNOP00000031832
C2H2 ZF
313
335
FECNECGKAFRVNSSLTEHQRIH
ENSRNOP00000031832
C2H2 ZF
341
363
YQCIECGKAFRDNSSFARHRKMH
ENSRNOP00000031832
C2H2 ZF
369
391
YRCGLCEKAFRDQSALAQHQRTH
ENSRNOP00000031832
C2H2 ZF
397
419
YTCNICEKAFSDHSALTQHKRVH
ENSRNOP00000031832
C2H2 ZF
425
447
YKCKTCGKAFFRSTHLTQHQRIH
ENSRNOP00000031832
C2H2 ZF
453
475
YKCNMCGKAFNQTANLIQHQRHH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy