Ctcfl (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000028661 T109155_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone binding activity. Predicted to be involved in macromolecule methylation; regulation of gene expression; and regulation of histone H3-K4 methylation. Predicted to be located in cytosol and nuclear body. Predicted to be active in nucleus. Orthologous to human CTCFL (CCCTC-binding factor like). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ctcfl
M09015_2.00 		Mus musculus
VBRGCGCCCCCTRSHGGN
NCCDSYAGGGGGCGCYVB		 Misc
Kulakovskiy et al.(2013)
CTCFL_MOUSE.H11MO.0.A 		0.810 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000034635 C2H2 ZF 255 277
ENSRNOP00000034635 C2H2 ZF 283 305
ENSRNOP00000034635 C2H2 ZF 311 334
ENSRNOP00000034635 C2H2 ZF 340 362
ENSRNOP00000034635 C2H2 ZF 368 390
ENSRNOP00000034635 C2H2 ZF 396 419
ENSRNOP00000034635 C2H2 ZF 426 449
ENSRNOP00000034635 C2H2 ZF 456 478
ENSRNOP00000034635 C2H2 ZF 484 506
ENSRNOP00000034635 C2H2 ZF 512 535
ENSRNOP00000034635 C2H2 ZF 544 565

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ctcfl Mus musculus ENSMUSG00000070495 D 0.810