CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Prdm6
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000030486
T109176_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable identical protein binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of smooth muscle cell differentiation; negative regulation of transcription, DNA-templated; and neurogenesis. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in patent ductus arteriosus. Orthologous to human PRDM6 (PR/SET domain 6). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.827
1.000
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000041369
C2H2 ZF
476
497
WKCGQCFKTFTQRILLQMHVCT
ENSRNOP00000041369
C2H2 ZF
504
526
YQCGHCSQSFSQPSELRNHVVTH
ENSRNOP00000041369
C2H2 ZF
532
554
FKCGYCGRAFAGATTLNNHIRTH
ENSRNOP00000041369
C2H2 ZF
560
581
FKCERCERSFTQATQLSRHQRM
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy