CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zfp28
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000042777
T109237_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFP28
M08378_2.00
Homo sapiens
DNNHNNHNHDDBMKYTCHDTTTCYTYWDNK
NAYMNHWRARGAAAHDGARMKVHHDNDNND
ChIP-seq
Schmitges et al.(2016)
Q8NHY6_2-12.RCADE
0.758
0.914
ZFP28
M08949_2.00
Homo sapiens
YTCTRTTTCTTCTKRWGTCA
TGACWYMAGAAGAAAYAGAR
Misc
Kulakovskiy et al.(2013)
ZFP28_HUMAN.H11MO.0.C
0.758
0.914
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000020523
C2H2 ZF
273
295
FKCNECKKTFTQSSSLTVHQRIH
ENSRNOP00000020523
C2H2 ZF
301
323
YKCNECGKAFSDGSSFARHQRCH
ENSRNOP00000020523
C2H2 ZF
329
352
YECLECGKAFIQNTSLVRHWRYYH
ENSRNOP00000020523
C2H2 ZF
358
380
FDCIDCGKAFSDHIGLNQHRRIH
ENSRNOP00000020523
C2H2 ZF
386
408
YTCDVCHKSFRYGSSLTVHQRIH
ENSRNOP00000020523
C2H2 ZF
414
436
YECEICRKAFSHHASLTQHQRVH
ENSRNOP00000020523
C2H2 ZF
442
464
FKCKECGKAFRQNIHLASHLRIH
ENSRNOP00000020523
C2H2 ZF
470
492
FECGDCGKSFSISSQLATHQRIH
ENSRNOP00000020523
C2H2 ZF
498
520
YECKVCNKAFTQKAHLAQHQKTH
ENSRNOP00000020523
C2H2 ZF
526
548
YECKECGKAFSQTTHLIQHQRVH
ENSRNOP00000020523
C2H2 ZF
554
576
YKCLECGKAFGDNSSCTQHQRLH
ENSRNOP00000020523
C2H2 ZF
582
604
YECVECGKAFKTKSSLICHRRCH
ENSRNOP00000020523
C2H2 ZF
610
632
YECSACGKAFSHRQSLSVHQRIH
ENSRNOP00000020523
C2H2 ZF
638
660
YECKECRKTFIQIGHLNQHKRVH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy