CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LOC102555083
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000050651
T109302_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.816
0.980
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.816
0.980
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.816
0.980
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.816
0.980
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.816
0.973
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000067685
C2H2 ZF
173
195
YICIECGKCFGRSSHLLQHQRIH
ENSRNOP00000067685
C2H2 ZF
201
223
YVCHVCGKAFSQSSVLSKHRRIH
ENSRNOP00000067685
C2H2 ZF
229
251
YECNECGKAFRVSSDLAQHHKIH
ENSRNOP00000067685
C2H2 ZF
257
279
HECLECGKAFTQLSHLIQHQRIH
ENSRNOP00000067685
C2H2 ZF
285
307
YVCPLCGKAFNHSTVLRSHQRVH
ENSRNOP00000067685
C2H2 ZF
315
335
CSECGKTFSVKRTLLQHQRVH
ENSRNOP00000067685
C2H2 ZF
341
363
YTCSECGKAFSDRSVLIQHHNVH
ENSRNOP00000067685
C2H2 ZF
369
391
YECSECGKTFSHRSTLMNHERIH
ENSRNOP00000067685
C2H2 ZF
397
419
YACYECGKAFVQHSHLIQHQRVH
ENSRNOP00000067685
C2H2 ZF
425
447
YVCGECGHAFSARRSLIQHERIH
ENSRNOP00000067685
C2H2 ZF
453
475
FQCTECGKAFSLKATLIVHLRTH
ENSRNOP00000067685
C2H2 ZF
481
503
YECNSCGKAFSQYSVLIQHQRIH
ENSRNOP00000067685
C2H2 ZF
509
531
YECGECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy