LOC102555083 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000050651 T109302_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY

RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.816 0.980
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB

VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.816 0.980
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC

GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.816 0.980
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN

NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.816 0.980
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB

VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.816 0.973
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000067685 C2H2 ZF 173 195
ENSRNOP00000067685 C2H2 ZF 201 223
ENSRNOP00000067685 C2H2 ZF 229 251
ENSRNOP00000067685 C2H2 ZF 257 279
ENSRNOP00000067685 C2H2 ZF 285 307
ENSRNOP00000067685 C2H2 ZF 315 335
ENSRNOP00000067685 C2H2 ZF 341 363
ENSRNOP00000067685 C2H2 ZF 369 391
ENSRNOP00000067685 C2H2 ZF 397 419
ENSRNOP00000067685 C2H2 ZF 425 447
ENSRNOP00000067685 C2H2 ZF 453 475
ENSRNOP00000067685 C2H2 ZF 481 503
ENSRNOP00000067685 C2H2 ZF 509 531

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

Invalid Input OrderBy

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action