CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF250
(
Sorex araneus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSSARG00000004999
T109455_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.804
0.940
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.804
0.940
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.804
0.940
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.804
0.940
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.804
0.940
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000004522
C2H2 ZF
187
209
YKCVECGKCFGRSSHLLQHQRTH
ENSSARP00000004522
C2H2 ZF
215
237
YVCSVCGKAFSQSSVLSKHRRIH
ENSSARP00000004522
C2H2 ZF
243
265
YECNECGKAFRVSSDLAQHHKIH
ENSSARP00000004522
C2H2 ZF
271
293
HECLECRKAFTQLSHLIQHQRIH
ENSSARP00000004522
C2H2 ZF
299
321
YVCPLCGKAFNHSTVLRSHQRVH
ENSSARP00000004522
C2H2 ZF
327
349
HECGECGRAFSVKRTLLQHQRVH
ENSSARP00000004522
C2H2 ZF
355
377
YTCSECGRAFSDRSVLIQHHNVH
ENSSARP00000004522
C2H2 ZF
383
405
YECSECGKAFSHRSTLMNHERIH
ENSSARP00000004522
C2H2 ZF
411
433
YGCYACGKAFVQHSHLIQHQRVH
ENSSARP00000004522
C2H2 ZF
439
461
YVCHECGHAFSARRSLVQHERIH
ENSSARP00000004522
C2H2 ZF
467
489
FQCSQCNKAFSLKATLIVHLRTH
ENSSARP00000004522
C2H2 ZF
495
517
YECSRCGKAFSQYSVLIQHQRIH
ENSSARP00000004522
C2H2 ZF
523
545
YECGECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Sorex araneus
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy