CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM4
(
Sus scrofa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSSSCG00000000160
T110152_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.827
1.000
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.827
1.000
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.827
1.000
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000000167
C2H2 ZF
588
610
WKCSMCPQAFISPSKLHVHFMGH
ENSSSCP00000000167
C2H2 ZF
616
638
HKCDFCSKAFSDPSNLRTHLKIH
ENSSSCP00000000167
C2H2 ZF
644
666
YRCTLCDKSFTQKAHLESHMVIH
ENSSSCP00000000167
C2H2 ZF
672
694
LKCDYCDKLFMRRQDLKQHVLIH
ENSSSCP00000000167
C2H2 ZF
700
722
IKCPKCDKLFLRTNHLKKHLNSH
ENSSSCP00000000167
C2H2 ZF
728
749
YVCEKCTKAYLTKYHLTRHLKT
Links
Other
C2H2 ZF
family TFs
Other
Sus scrofa
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy