GLI2 (Sus scrofa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSSSCG00000015733 T110406_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gli2
M01024_2.00
Mus musculus
NGACCACCYN

NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.827 1.000
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB

VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.827 1.000
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR

YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.827 1.000
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN

NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.827 1.000
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG

CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.827 1.000
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG

CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.827 1.000
GLI2
M10114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.827 1.000
GLI2
M10115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.827 1.000
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG

CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.827 1.000
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.807 0.930
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.807 0.930
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.807 0.930
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.807 0.930
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.807 0.930
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.807 0.930
Gli1
M01023_2.00
Mus musculus
NGACCACCHN

NDGGTGGTCN
PBM
Peterson et al.(2012)
Gli1
0.779 0.843
GLI1
M02643_2.00
Homo sapiens
GACCACCCAMG

CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI1
0.779 0.843
Gli1
M08976_2.00
Mus musculus
RGRCCACCCASV

BSTGGGTGGYCY
Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C
0.779 0.843
GLI1
M10176_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q2
0.779 0.843
GLI1
M10177_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3_01
0.779 0.843
GLI1
M10178_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3
0.779 0.843
GLI1
M10179_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI_Q6
0.779 0.843
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN

NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.761 0.930
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS

STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.761 0.930
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR

YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.761 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000016673 C2H2 ZF 288 313
ENSSSCP00000016673 C2H2 ZF 321 348
ENSSSCP00000016673 C2H2 ZF 354 378
ENSSSCP00000016673 C2H2 ZF 384 409
ENSSSCP00000016673 C2H2 ZF 415 440

Links

Other C2H2 ZF family TFs
Other Sus scrofa TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29693.m002035 Ricinus communis 29693.m002035 N 0.000
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.000
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.000
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.000
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.000
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.000
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.000
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.000
Bo4g182600 Brassica oleracea Bo4g182600 N 0.000
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.000
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.000
Bra021911 Brassica rapa Bra021911 N 0.000
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.000
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.000
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.000
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.000
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.000
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.000
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.000
Ca_05162 Cicer arietinum Ca_05162 N 0.000
Ca_05164 Cicer arietinum Ca_05164 N 0.000
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.000
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.000
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.000
D917_01243 Trichinella nativa D917_01243 N 0.000
D917_08464 Trichinella nativa D917_08464 N 0.000
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N 0.000
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.000
F775_05073 Aegilops tauschii F775_05073 I 0.000
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.000
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.000
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.000
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.000
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.000
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.000
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.000
GLYMA08G20341 Glycine max GLYMA08G20341 N 0.000
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.000
Gorai.012G047000 Gossypium raimondii Gorai.012G047000 N 0.000
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.000
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.000
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.000
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.000
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.000
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.000
LCUP018488 Lucilia cuprina LCUP018488 N 0.000
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.000
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.000
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.000
MCINX003696 Melitaea cinxia MCINX003696 N 0.000
MDP0000143506 Malus domestica MDP0000143506 N 0.000
MDP0000170945 Malus domestica MDP0000170945 N 0.000
MDP0000242568 Malus domestica MDP0000242568 I 0.000
MDP0000392251 Malus domestica MDP0000392251 N 0.000
MDP0000695104 Malus domestica MDP0000695104 N 0.000
mgf009922m Mimulus guttatus mgf009922m N 0.000
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.000
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.000
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.000
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.000
OB01G34910 Oryza brachyantha OB01G34910 I 0.000
OBART01G25720 Oryza barthii OBART01G25720 N 0.000
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.000
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.000
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.000
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.000
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.000
OS01G0666200 Oryza sativa OS01G0666200 N 0.000
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.000
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.000
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.000
PK22924.1 Cannabis sativa PK22924.1 N 0.000
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.000
PredSwiss_CON4.1 Pneumocystis carinii PredSwiss_CON4.1 N 0.000
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.000
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.000
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.000
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.000
Si003021m.g Setaria italica Si003021m.g N 0.000
Si007288m.g Setaria italica Si007288m.g I 0.000
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N 0.000
TCM_029514 Theobroma cacao TCM_029514 N 0.000
TCM_042534 Theobroma cacao TCM_042534 I 0.000
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.000
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.000
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.000
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.000
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.000
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.000
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.000