CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN16
(
Sus scrofa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSSSCG00000022664
T110481_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN16
M02924_2.00
Homo sapiens
MRTGTTAACAGAACACCY
RGGTGTTCTGTTAACAYK
SELEX
Jolma et al.(2013)
ZNF435_1
0.824
0.989
ZSCAN16
M04623_2.00
Homo sapiens
HGAGGCTCTGTTAACAHTB
VADTGTTAACAGAGCCTCD
SELEX
Yin et al.(2017)
ZSCAN16_eDBD_HT-SELEX
0.824
0.989
ZSCAN16
M04625_2.00
Homo sapiens
NGAGGCTCTGTTAACANYN
NRNTGTTAACAGAGCCTCN
SELEX
Yin et al.(2017)
ZSCAN16_FL_HT-SELEX
0.824
0.989
ZSCAN16
M08377_2.00
Homo sapiens
RTRTRTRTATRTRTRTRTATATRT
AYATATAYAYAYAYATAYAYAYAY
ChIP-seq
Schmitges et al.(2016)
Q9H4T2.MEME
0.824
0.989
ZSCAN16
M04624_2.00
Homo sapiens
HGAGGCTCTGTTAACAHTB
VADTGTTAACAGAGCCTCD
SELEX
Yin et al.(2017)
ZSCAN16_eDBD_Methyl-HT-SELEX
0.824
0.989
ZSCAN16
M04626_2.00
Homo sapiens
NGAGGCTCTGTTAACAHTN
NADTGTTAACAGAGCCTCN
SELEX
Yin et al.(2017)
ZSCAN16_FL_Methyl-HT-SELEX
0.824
0.989
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000022424
C2H2 ZF
234
256
YKCDDCGKSFSHSSDLSKHRRTH
ENSSSCP00000022424
C2H2 ZF
262
284
YKCDECGKAFIQRSHLIGHHRVH
ENSSSCP00000022424
C2H2 ZF
290
312
YKCKECGKDFSGRTGLIQHQRIH
ENSSSCP00000022424
C2H2 ZF
318
340
YECDECGRPFRVSSALIRHQRIH
Links
Other
C2H2 ZF
family TFs
Other
Sus scrofa
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy