CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSSCG00000027957
(
Sus scrofa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSSSCG00000027957
T110572_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.793
0.916
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.793
0.916
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.793
0.916
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.793
0.916
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.793
0.916
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000020062
C2H2 ZF
203
225
YKCIECGKCFGRSSHLLQHQRTH
ENSSSCP00000020062
C2H2 ZF
231
253
YVCGVCGKAFSQSSVLSKHRRIH
ENSSSCP00000020062
C2H2 ZF
259
281
YECNECGKAFRVSSDLAQHHKIH
ENSSSCP00000020062
C2H2 ZF
287
309
HECLECRKAFTQLSHLIQHQRIH
ENSSSCP00000020062
C2H2 ZF
315
337
YVCPLCGKAFNHSTVLRSHQRVH
ENSSSCP00000020062
C2H2 ZF
343
365
HECEECGRAFSVKRTLLQHQRVH
ENSSSCP00000020062
C2H2 ZF
371
393
YTCSECGRAFSDRSVLIQHHNVH
ENSSSCP00000020062
C2H2 ZF
399
421
YECGECGKAFSHRSTLMNHERIH
ENSSSCP00000020062
C2H2 ZF
427
449
YGCYACGKAFVQHSHLTQHQRVH
ENSSSCP00000020062
C2H2 ZF
455
477
YVCGECGHAFSARRSLVQHQRIH
ENSSSCP00000020062
C2H2 ZF
483
505
FRCAQCSKTFSLKATLIVHLRTH
ENSSSCP00000020062
C2H2 ZF
511
533
YECSRCGKAFSQYSVLVQHQRIH
ENSSSCP00000020062
C2H2 ZF
539
561
YECGECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Sus scrofa
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy