gfi1ab (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000000651 T111891_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.814 0.957
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.814 0.957
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.814 0.957
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.814 0.957
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.814 0.957
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.814 0.957
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.814 0.957
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.814 0.957
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.812 0.949
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.786 0.891
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.786 0.891
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.786 0.891
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.784 0.884
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.784 0.884
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.784 0.884
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.784 0.884
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.784 0.884
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.784 0.884
GFI1
M00237_2.00
Homo sapiens
ATATCAVD

HBTGATAT
PBM
Barrera et al.(2016)
GFI1_N382S
0.777 0.949
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.774 0.877
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.773 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002442 C2H2 ZF 227 250
ENSTNIP00000002442 C2H2 ZF 256 278
ENSTNIP00000002442 C2H2 ZF 284 306
ENSTNIP00000002442 C2H2 ZF 312 334
ENSTNIP00000002442 C2H2 ZF 340 362
ENSTNIP00000002442 C2H2 ZF 368 391

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R000889 Calypte anna Aan_R000889 I 0.817
Aan_R008865 Calypte anna Aan_R008865 I 0.788
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.788
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.817
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.817
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.817
CapteG45287 Capitella teleta CapteG45287 I 0.766
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.781
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.770
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.812
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.793
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.814
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.822
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.788
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.817
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.773
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.802
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.786
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.788
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.817
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.817
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.781
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.774
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.784
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.814
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.813
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.772
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.814
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.814
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.784
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.814
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.784
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.791
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.764
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.815
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.786
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.802
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.814
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.786
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.772
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.791
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.817
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.784
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.814
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.790
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.814
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.789
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.791
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.794
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.773
GE14143 Drosophila yakuba FBgn0231766 I 0.773
GF15430 Drosophila ananassae FBgn0092455 I 0.773
GFI1 Sus scrofa ENSSSCG00000006902 I 0.814
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.814
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.814
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.811
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.814
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.814
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.815
GFI1 Canis familiaris ENSCAFG00000020155 I 0.814
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.814
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.814
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.814
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.814
GFI1 Homo sapiens ENSG00000162676 D 0.814
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.817
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.814
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.814
GFI1 Felis catus ENSFCAG00000005914 I 0.814
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.814
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.817
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.814
GFI1 Equus caballus ENSECAG00000006647 I 0.814
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.814
GFI1 Bos taurus ENSBTAG00000016723 I 0.814
Gfi1 Mus musculus ENSMUSG00000029275 D 0.814
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.795
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.791
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.798
gfi1aa Danio rerio ENSDARG00000020746 I 0.806
gfi1ab Danio rerio ENSDARG00000044457 I 0.815
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.823
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.804
GFI1B Canis familiaris ENSCAFG00000019877 I 0.784
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.768
GFI1B Gallus gallus ENSGALG00000003478 I 0.788
GFI1B Felis catus ENSFCAG00000027147 I 0.782
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.774
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.784
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.786
GFI1B Procavia capensis ENSPCAG00000012329 I 0.782
GFI1B Homo sapiens ENSG00000165702 D 0.784
gfi1b Danio rerio ENSDARG00000079947 I 0.772
GFI1B Equus caballus ENSECAG00000008127 I 0.784
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.786
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.784
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.781
GFI1B Bos taurus ENSBTAG00000012772 I 0.773
Gfi1b Mus musculus ENSMUSG00000026815 D 0.786
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.776
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.784
GFI1B Sus scrofa ENSSSCG00000005737 I 0.782
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.784
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.782
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.784
gfi1b Oryzias latipes ENSORLG00000014390 I 0.762
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.783
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.784
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.788
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.773
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.776
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.766
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.766
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.768
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.788
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.817
GG10437 Drosophila erecta FBgn0102746 I 0.773
GH13715 Drosophila grimshawi FBgn0121191 I 0.773
GI23984 Drosophila mojavensis FBgn0146708 I 0.773
GJ21268 Drosophila virilis FBgn0208401 I 0.773
GK24242 Drosophila willistoni FBgn0226203 I 0.773
GL26188 Drosophila persimilis FBgn0163770 I 0.773
GM16223 Drosophila sechellia FBgn0171139 I 0.773
LotgiG129344 Lottia gigantea LotgiG129344 I 0.779
LotgiG83709 Lottia gigantea LotgiG83709 I 0.772
MDOA011065 Musca domestica MDOA011065 I 0.773
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.767
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.815
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.812
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.761
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.771
sens-2 Drosophila melanogaster FBgn0051632 D 0.773
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.780
Tal_R001363 Tyto alba Tal_R001363 I 0.791
Tal_R006464 Tyto alba Tal_R006464 I 0.817
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.782